Zinc in PDB 3swn: Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings

The structure of Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings, PDB code: 3swn was solved by M.Mund, A.Neu, J.L.Ullmann, U.Neu, R.Sprangers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.38 / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	79.530, 63.100, 92.760, 90.00, 90.01, 90.00
R / Rfree (%)	21.8 / 26.9

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Zinc atom in the Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings (pdb code 3swn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 16 binding sites of Zinc where determined in the Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings, PDB code: 3swn:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 16 in the Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn114 b:73.1 occ:0.90 OD2 C:ASP62 2.0 65.4 1.0 CG C:ASP62 3.1 74.0 1.0 OD1 C:ASP62 3.5 87.2 1.0 OD1 C:ASP63 4.0 81.9 1.0 N C:LEU85 4.1 44.5 1.0 N C:ASP63 4.2 62.5 1.0 CB C:LEU85 4.2 46.2 1.0 CB C:ASP62 4.4 63.3 1.0 C C:GLY84 4.5 50.8 1.0 CA C:LEU85 4.5 51.5 1.0 CA C:GLY84 4.7 49.5 1.0 CA C:ASP62 4.8 56.9 1.0 CG C:ASP63 4.8 81.4 1.0 CG C:LEU85 4.9 57.7 1.0 C C:ASP62 5.0 58.5 1.0

Zinc binding site 2 out of 16 in the Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn81 b:58.8 occ:0.76 OE1 A:GLU49 2.0 55.8 1.0 OH B:TYR69 2.1 55.9 1.0 NE2 A:HIS60 2.2 56.5 1.0 OE2 A:GLU58 2.9 71.3 1.0 CD A:GLU58 2.9 70.4 1.0 CE1 A:HIS60 3.0 57.8 1.0 CZ B:TYR69 3.0 51.2 1.0 CD A:GLU49 3.1 60.4 1.0 OE1 A:GLU58 3.2 65.6 1.0 CD2 A:HIS60 3.3 57.8 1.0 CG A:GLU58 3.5 63.7 1.0 OE2 A:GLU49 3.6 66.2 1.0 CE2 B:TYR69 3.6 49.8 1.0 NE B:ARG20 3.9 70.4 1.0 CE1 B:TYR69 4.0 49.6 1.0 NH2 B:ARG20 4.1 65.6 1.0 ND1 A:HIS60 4.2 61.0 1.0 CZ B:ARG20 4.2 74.0 1.0 CG A:GLU49 4.3 54.5 1.0 CG A:HIS60 4.3 59.6 1.0 CB A:GLU49 4.4 56.4 1.0 CD B:ARG20 4.8 64.5 1.0 CD2 B:TYR69 4.8 46.3 1.0 CB A:GLU58 4.8 66.5 1.0 CD2 B:LEU18 5.0 57.4 1.0

Zinc binding site 3 out of 16 in the Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn76 b:92.6 occ:1.00 OD1 B:ASP59 2.5 78.8 1.0 O B:HOH81 2.5 68.0 1.0 O B:HOH80 2.7 75.1 1.0 O B:HOH82 2.7 74.2 1.0 OD2 B:ASP59 2.7 80.7 1.0 CG B:ASP59 2.9 75.8 1.0 OE1 B:GLU43 3.2 81.5 1.0 CD B:GLU43 4.1 86.7 1.0 OE2 B:GLU43 4.4 88.0 1.0 CB B:ASP59 4.4 68.7 1.0 O B:GLY58 4.7 72.8 1.0

Zinc binding site 4 out of 16 in the Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn77 b:70.5 occ:0.50 O B:HOH78 2.5 76.6 1.0 SG B:CYS33 2.8 74.2 1.0 O B:SER32 3.2 80.2 1.0 CB B:CYS33 3.6 68.5 1.0 CA B:CYS33 3.9 72.6 1.0 C B:SER32 4.1 67.7 1.0 ZN F:ZN115 4.2 88.5 1.0 N B:CYS33 4.5 65.2 1.0 OG B:SER32 4.8 74.8 1.0

Zinc binding site 5 out of 16 in the Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn114 b:88.2 occ:1.00 OD2 F:ASP63 2.2 59.8 1.0 CG F:ASP63 3.0 58.2 1.0 OD1 F:ASP63 3.0 61.7 1.0 OD1 F:ASP62 3.9 62.9 1.0 CG F:ASP62 4.1 60.4 1.0 OD2 F:ASP62 4.2 59.0 1.0 CB F:ASP63 4.4 52.4 1.0 CD1 F:ILE49 4.7 51.5 1.0 CB F:ASP62 5.0 55.5 1.0

Zinc binding site 6 out of 16 in the Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn115 b:88.5 occ:1.00 OD2 F:ASP27 2.6 87.7 1.0 SG B:CYS33 2.6 74.2 1.0 OD1 F:ASP27 2.7 73.7 1.0 CG F:ASP27 3.0 79.1 1.0 CB B:CYS33 3.4 68.5 1.0 O F:HOH117 3.6 69.3 1.0 O B:HOH78 4.1 76.6 1.0 ZN B:ZN77 4.2 70.5 0.5 CB F:ASP27 4.5 74.9 1.0 CB B:ALA41 4.8 56.5 1.0 CA B:CYS33 4.8 72.6 1.0 OG B:SER32 5.0 74.8 1.0

Zinc binding site 7 out of 16 in the Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn81 b:66.3 occ:0.90 OE1 D:GLU49 2.0 61.0 1.0 NE2 D:HIS60 2.1 57.9 1.0 OH E:TYR69 2.2 59.7 1.0 OE1 D:GLU58 2.8 72.7 1.0 CD D:GLU49 2.9 59.1 1.0 CE1 D:HIS60 2.9 60.3 1.0 CZ E:TYR69 3.0 58.1 1.0 OE2 D:GLU49 3.1 62.3 1.0 NH2 E:ARG20 3.1 74.3 1.0 CD2 D:HIS60 3.2 60.0 1.0 CD D:GLU58 3.3 71.3 1.0 CE2 E:TYR69 3.4 56.3 1.0 OE2 D:GLU58 3.8 73.2 1.0 CZ E:ARG20 4.0 76.5 1.0 CG D:GLU58 4.1 66.3 1.0 CE1 E:TYR69 4.1 54.0 1.0 ND1 D:HIS60 4.1 60.8 1.0 NE E:ARG20 4.1 70.8 1.0 CG D:HIS60 4.3 62.6 1.0 CG D:GLU49 4.3 55.6 1.0 CB D:GLU58 4.6 66.3 1.0 CB D:GLU49 4.6 55.8 1.0 CD2 E:TYR69 4.7 51.3 1.0 CE D:MET63 4.7 50.1 1.0 CD2 E:LEU18 4.7 66.5 1.0 NH1 D:ARG27 4.8 70.7 1.0 CE1 D:PHE29 5.0 48.5 1.0

Zinc binding site 8 out of 16 in the Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn82 b:96.0 occ:0.82 OE2 D:GLU9 2.2 84.0 1.0 CD D:GLU9 3.2 82.3 1.0 OE1 D:GLU9 3.5 83.2 1.0 CD1 D:LEU6 4.3 70.6 1.0 CG D:LEU6 4.4 73.0 1.0 CG D:GLU9 4.5 75.5 1.0

Zinc binding site 9 out of 16 in the Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings within 5.0Å range: probe atom residue distance (Å) B Occ O:Zn114 b:67.0 occ:0.76 OD2 O:ASP62 2.1 64.3 1.0 CG O:ASP62 3.1 73.5 1.0 OD1 O:ASP62 3.6 87.4 1.0 OD1 O:ASP63 4.1 80.6 1.0 N O:LEU85 4.1 44.3 1.0 CB O:LEU85 4.2 47.0 1.0 N O:ASP63 4.2 62.6 1.0 CB O:ASP62 4.4 61.5 1.0 C O:GLY84 4.5 50.4 1.0 CA O:LEU85 4.6 50.8 1.0 CA O:GLY84 4.7 50.3 1.0 CG O:ASP63 4.8 82.3 1.0 CA O:ASP62 4.8 56.0 1.0 CG O:LEU85 4.9 58.0 1.0

Zinc binding site 10 out of 16 in the Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1 7 and LSM2 8 Rings within 5.0Å range: probe atom residue distance (Å) B Occ P:Zn81 b:64.2 occ:0.91 OE1 P:GLU49 2.0 56.1 1.0 NE2 P:HIS60 2.1 57.0 1.0 OH Q:TYR69 2.1 55.9 1.0 CD P:GLU58 2.9 68.8 1.0 CE1 P:HIS60 2.9 57.4 1.0 OE2 P:GLU58 2.9 71.4 1.0 CZ Q:TYR69 3.1 52.0 1.0 CD P:GLU49 3.1 59.7 1.0 OE1 P:GLU58 3.2 64.7 1.0 CD2 P:HIS60 3.2 57.6 1.0 CG P:GLU58 3.5 64.0 1.0 OE2 P:GLU49 3.6 67.6 1.0 CE2 Q:TYR69 3.7 49.6 1.0 NE Q:ARG20 4.0 70.5 1.0 CE1 Q:TYR69 4.0 51.0 1.0 NH2 Q:ARG20 4.0 66.5 1.0 ND1 P:HIS60 4.1 61.1 1.0 CZ Q:ARG20 4.3 73.6 1.0 CG P:HIS60 4.3 60.6 1.0 CG P:GLU49 4.4 55.1 1.0 CB P:GLU49 4.4 57.4 1.0 CB P:GLU58 4.8 67.1 1.0 CD Q:ARG20 4.9 64.1 1.0 CD2 Q:TYR69 4.9 46.0 1.0 CD2 Q:LEU18 4.9 56.6 1.0

M.Mund, A.Neu, J.Ullmann, U.Neu, R.Sprangers. Structure of the LSM657 Complex: An Assembly Intermediate of the LSM1-7 and LSM2-8 Rings. J.Mol.Biol. V. 414 165 2011.
ISSN: ISSN 0022-2836
PubMed: 22001694
DOI: 10.1016/J.JMB.2011.09.051