Atomistry » Zinc » PDB 3sjc-3sub » 3sp1
Atomistry »
  Zinc »
    PDB 3sjc-3sub »
      3sp1 »

Zinc in PDB 3sp1: Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi

Enzymatic activity of Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi

All present enzymatic activity of Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi:
6.1.1.16;

Protein crystallography data

The structure of Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi, PDB code: 3sp1 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 62.620, 49.890, 179.630, 90.00, 93.18, 90.00
R / Rfree (%) 22.4 / 27.4

Other elements in 3sp1:

The structure of Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi (pdb code 3sp1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi, PDB code: 3sp1:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3sp1

Go back to Zinc Binding Sites List in 3sp1
Zinc binding site 1 out of 2 in the Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn481

b:32.1
occ:1.00
O A:HOH525 2.0 22.1 1.0
NE2 A:HIS246 2.1 26.2 1.0
SG A:CYS221 2.2 24.1 1.0
SG A:CYS27 2.5 28.2 1.0
CB A:CYS27 3.0 24.4 1.0
CD2 A:HIS246 3.1 26.1 1.0
CE1 A:HIS246 3.2 26.3 1.0
OE2 A:GLU250 3.2 22.6 1.0
CB A:CYS221 3.3 22.1 1.0
CA A:CYS27 3.8 23.0 1.0
CD A:GLU250 4.2 23.5 1.0
CG A:HIS246 4.3 26.5 1.0
ND1 A:HIS246 4.3 27.1 1.0
OD1 A:ASN65 4.3 24.4 1.0
CE2 A:TYR25 4.5 22.2 1.0
CE3 A:TRP217 4.6 29.0 1.0
CA A:CYS221 4.6 21.3 1.0
N A:CYS27 4.8 21.9 1.0
OH A:TYR25 4.8 22.7 1.0
CZ3 A:TRP217 4.9 30.0 1.0
CE1 A:HIS236 4.9 16.9 1.0
OE1 A:GLU250 4.9 23.8 1.0
CG A:ASN65 5.0 23.7 1.0
NE2 A:HIS247 5.0 29.0 1.0
C A:CYS27 5.0 22.8 1.0

Zinc binding site 2 out of 2 in 3sp1

Go back to Zinc Binding Sites List in 3sp1
Zinc binding site 2 out of 2 in the Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn481

b:30.8
occ:1.00
NE2 B:HIS246 2.2 29.4 1.0
SG B:CYS27 2.3 29.1 1.0
O B:HOH512 2.3 35.1 1.0
SG B:CYS221 2.5 19.9 1.0
CB B:CYS27 3.0 24.7 1.0
CD2 B:HIS246 3.1 29.8 1.0
CE1 B:HIS246 3.2 30.7 1.0
CB B:CYS221 3.4 20.2 1.0
OE2 B:GLU250 3.5 23.5 1.0
CA B:CYS27 3.8 22.8 1.0
CG B:HIS246 4.3 31.1 1.0
ND1 B:HIS246 4.3 32.4 1.0
CD B:GLU250 4.3 23.0 1.0
OD1 B:ASN65 4.3 22.7 1.0
CE3 B:TRP217 4.5 30.7 1.0
CZ3 B:TRP217 4.6 31.9 1.0
NE2 B:HIS247 4.7 29.8 1.0
OE1 B:GLU250 4.7 22.8 1.0
N B:CYS27 4.7 21.4 1.0
ND2 B:ASN65 4.8 23.9 1.0
CG B:ASN65 4.8 23.0 1.0
CA B:CYS221 4.8 20.3 1.0
CE2 B:TYR25 4.8 21.2 1.0
CD2 B:HIS247 4.9 28.9 1.0
O B:TRP217 4.9 22.6 1.0
C B:CYS27 5.0 22.2 1.0
CE1 B:HIS236 5.0 19.0 1.0
CE1 B:HIS242 5.0 28.3 1.0

Reference:

S.O.Moen, T.E.Edwards, D.M.Dranow, M.C.Clifton, B.Sankaran, W.C.Van Voorhis, A.Sharma, C.Manoil, B.L.Staker, P.J.Myler, D.D.Lorimer. Ligand Co-Crystallization of Aminoacyl-Trna Synthetases From Infectious Disease Organisms. Sci Rep V. 7 223 2017.
ISSN: ESSN 2045-2322
PubMed: 28303005
DOI: 10.1038/S41598-017-00367-6
Page generated: Wed Dec 16 04:50:43 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy