Atomistry » Zinc » PDB 3sjc-3sub » 3sod
Atomistry »
  Zinc »
    PDB 3sjc-3sub »
      3sod »

Zinc in PDB 3sod: Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of Buried Cysteine

Enzymatic activity of Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of Buried Cysteine

All present enzymatic activity of Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of Buried Cysteine:
1.15.1.1;

Protein crystallography data

The structure of Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of Buried Cysteine, PDB code: 3sod was solved by D.E.Mcree, S.M.Redford, E.D.Getzoff, J.R.Lepock, R.A.Hallewell, J.A.Tainer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 92.500, 89.400, 70.500, 90.00, 95.70, 90.00
R / Rfree (%) 19 / n/a

Other elements in 3sod:

The structure of Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of Buried Cysteine also contains other interesting chemical elements:

Copper (Cu) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of Buried Cysteine (pdb code 3sod). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of Buried Cysteine, PDB code: 3sod:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 3sod

Go back to Zinc Binding Sites List in 3sod
Zinc binding site 1 out of 4 in the Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of Buried Cysteine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of Buried Cysteine within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Zn153

b:11.3
occ:1.00
 OD1 O:ASP81 1.8 8.2 1.0
ND1 O:HIS61 1.9 7.5 1.0
ND1 O:HIS78 2.0 3.9 1.0
ND1 O:HIS69 2.1 8.6 1.0
CE1 O:HIS78 2.8 5.2 1.0
CE1 O:HIS61 2.9 8.5 1.0
CG O:ASP81 2.9 10.1 1.0
CG O:HIS61 3.1 7.4 1.0
CE1 O:HIS69 3.1 9.2 1.0
CG O:HIS78 3.1 4.3 1.0
OD2 O:ASP81 3.2 10.3 1.0
CG O:HIS69 3.3 9.2 1.0
CB O:HIS61 3.5 6.4 1.0
CB O:HIS78 3.6 5.1 1.0
CB O:HIS69 3.7 12.1 1.0
NE2 O:HIS78 3.9 4.0 1.0
O O:LYS134 3.9 8.8 1.0
CA O:HIS69 4.0 13.9 1.0
NE2 O:HIS61 4.0 6.4 1.0
CD2 O:HIS61 4.1 6.9 1.0
CD2 O:HIS78 4.1 3.4 1.0
NE2 O:HIS69 4.2 8.0 1.0
CB O:ASP81 4.3 8.3 1.0
CD2 O:HIS69 4.3 9.3 1.0
CA O:ASP81 4.7 8.4 1.0
CA O:HIS78 4.7 9.9 1.0
C O:LYS134 4.7 9.6 1.0
N O:HIS78 4.8 10.9 1.0
N O:ASP81 4.9 8.6 1.0
N O:GLY70 4.9 13.1 1.0
C O:HIS69 4.9 14.2 1.0
CA O:THR135 4.9 9.4 1.0
CD2 O:HIS44 5.0 2.0 1.0
N O:HIS69 5.0 15.0 1.0

Zinc binding site 2 out of 4 in 3sod

Go back to Zinc Binding Sites List in 3sod
Zinc binding site 2 out of 4 in the Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of Buried Cysteine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of Buried Cysteine within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn153

b:11.3
occ:1.00
 OD1 Y:ASP81 1.8 8.2 1.0
ND1 Y:HIS61 1.9 7.5 1.0
ND1 Y:HIS78 2.0 3.9 1.0
ND1 Y:HIS69 2.1 8.6 1.0
CE1 Y:HIS78 2.8 5.2 1.0
CE1 Y:HIS61 2.9 8.5 1.0
CG Y:ASP81 2.9 10.1 1.0
CG Y:HIS61 3.1 7.4 1.0
CE1 Y:HIS69 3.1 9.2 1.0
CG Y:HIS78 3.1 4.3 1.0
OD2 Y:ASP81 3.2 10.3 1.0
CG Y:HIS69 3.3 9.2 1.0
CB Y:HIS61 3.5 6.4 1.0
CB Y:HIS78 3.6 5.1 1.0
CB Y:HIS69 3.7 12.1 1.0
NE2 Y:HIS78 3.9 4.0 1.0
O Y:LYS134 3.9 8.8 1.0
CA Y:HIS69 4.0 13.9 1.0
NE2 Y:HIS61 4.0 6.4 1.0
CD2 Y:HIS61 4.1 6.9 1.0
CD2 Y:HIS78 4.1 3.4 1.0
NE2 Y:HIS69 4.2 8.0 1.0
CB Y:ASP81 4.3 8.3 1.0
CD2 Y:HIS69 4.3 9.3 1.0
CA Y:ASP81 4.7 8.4 1.0
CA Y:HIS78 4.7 9.9 1.0
C Y:LYS134 4.7 9.6 1.0
N Y:HIS78 4.8 10.9 1.0
N Y:ASP81 4.9 8.6 1.0
N Y:GLY70 4.9 13.1 1.0
C Y:HIS69 4.9 14.2 1.0
CA Y:THR135 4.9 9.4 1.0
CD2 Y:HIS44 5.0 2.0 1.0
N Y:HIS69 5.0 15.0 1.0

Zinc binding site 3 out of 4 in 3sod

Go back to Zinc Binding Sites List in 3sod
Zinc binding site 3 out of 4 in the Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of Buried Cysteine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of Buried Cysteine within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn153

b:11.3
occ:1.00
 OD1 G:ASP81 1.8 8.2 1.0
ND1 G:HIS61 1.9 7.5 1.0
ND1 G:HIS78 2.0 3.9 1.0
ND1 G:HIS69 2.1 8.6 1.0
CE1 G:HIS78 2.8 5.2 1.0
CE1 G:HIS61 2.9 8.5 1.0
CG G:ASP81 2.9 10.1 1.0
CG G:HIS61 3.1 7.4 1.0
CE1 G:HIS69 3.1 9.2 1.0
CG G:HIS78 3.1 4.3 1.0
OD2 G:ASP81 3.2 10.3 1.0
CG G:HIS69 3.3 9.2 1.0
CB G:HIS61 3.5 6.4 1.0
CB G:HIS78 3.6 5.1 1.0
CB G:HIS69 3.7 12.1 1.0
NE2 G:HIS78 3.9 4.0 1.0
O G:LYS134 3.9 8.8 1.0
CA G:HIS69 4.0 13.9 1.0
NE2 G:HIS61 4.0 6.4 1.0
CD2 G:HIS61 4.1 6.9 1.0
CD2 G:HIS78 4.1 3.4 1.0
NE2 G:HIS69 4.2 8.0 1.0
CB G:ASP81 4.3 8.3 1.0
CD2 G:HIS69 4.3 9.3 1.0
CA G:ASP81 4.7 8.4 1.0
CA G:HIS78 4.7 9.9 1.0
C G:LYS134 4.7 9.6 1.0
N G:HIS78 4.8 10.9 1.0
N G:ASP81 4.9 8.6 1.0
N G:GLY70 4.9 13.1 1.0
C G:HIS69 4.9 14.2 1.0
CA G:THR135 4.9 9.4 1.0
CD2 G:HIS44 5.0 2.0 1.0
N G:HIS69 5.0 15.0 1.0

Zinc binding site 4 out of 4 in 3sod

Go back to Zinc Binding Sites List in 3sod
Zinc binding site 4 out of 4 in the Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of Buried Cysteine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of Buried Cysteine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn153

b:11.3
occ:1.00
 OD1 B:ASP81 1.8 8.2 1.0
ND1 B:HIS61 1.9 7.5 1.0
ND1 B:HIS78 2.0 3.9 1.0
ND1 B:HIS69 2.1 8.6 1.0
CE1 B:HIS78 2.8 5.2 1.0
CE1 B:HIS61 2.9 8.5 1.0
CG B:ASP81 2.9 10.1 1.0
CG B:HIS61 3.1 7.4 1.0
CE1 B:HIS69 3.1 9.2 1.0
CG B:HIS78 3.1 4.3 1.0
OD2 B:ASP81 3.2 10.3 1.0
CG B:HIS69 3.3 9.2 1.0
CB B:HIS61 3.5 6.4 1.0
CB B:HIS78 3.6 5.1 1.0
CB B:HIS69 3.7 12.1 1.0
NE2 B:HIS78 3.9 4.0 1.0
O B:LYS134 3.9 8.8 1.0
CA B:HIS69 4.0 13.9 1.0
NE2 B:HIS61 4.0 6.4 1.0
CD2 B:HIS61 4.1 6.9 1.0
CD2 B:HIS78 4.1 3.4 1.0
NE2 B:HIS69 4.2 8.0 1.0
CB B:ASP81 4.3 8.3 1.0
CD2 B:HIS69 4.3 9.3 1.0
CA B:ASP81 4.7 8.4 1.0
CA B:HIS78 4.7 9.9 1.0
C B:LYS134 4.7 9.6 1.0
N B:HIS78 4.8 10.9 1.0
N B:ASP81 4.9 8.6 1.0
N B:GLY70 4.9 13.1 1.0
C B:HIS69 4.9 14.2 1.0
CA B:THR135 4.9 9.4 1.0
CD2 B:HIS44 5.0 2.0 1.0
N B:HIS69 5.0 15.0 1.0

Reference:

D.E.Mcree, S.M.Redford, E.D.Getzoff, J.R.Lepock, R.A.Hallewell, J.A.Tainer. Changes in Crystallographic Structure and Thermostability of A Cu,Zn Superoxide Dismutase Mutant Resulting From the Removal of A Buried Cysteine. J.Biol.Chem. V. 265 14234 1990.
ISSN: ISSN 0021-9258
PubMed: 2387847
Page generated: Sat Oct 26 15:57:50 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy