Atomistry » Zinc » PDB 3sck-3sjd » 3siq
Atomistry »
  Zinc »
    PDB 3sck-3sjd »
      3siq »

Zinc in PDB 3siq: Crystal Structure of Autoinhibited DIAP1-BIR1 Domain

Protein crystallography data

The structure of Crystal Structure of Autoinhibited DIAP1-BIR1 Domain, PDB code: 3siq was solved by X.Li, J.Wang, Y.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.98 / 2.40
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 99.782, 99.782, 71.344, 90.00, 90.00, 120.00
R / Rfree (%) 14.6 / 21.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Autoinhibited DIAP1-BIR1 Domain (pdb code 3siq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Crystal Structure of Autoinhibited DIAP1-BIR1 Domain, PDB code: 3siq:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 3siq

Go back to Zinc Binding Sites List in 3siq
Zinc binding site 1 out of 6 in the Crystal Structure of Autoinhibited DIAP1-BIR1 Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Autoinhibited DIAP1-BIR1 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn200

b:28.5
occ:1.00
 NE2 A:HIS100 2.0 23.2 1.0
SG A:CYS83 2.2 27.7 1.0
SG A:CYS80 2.3 17.7 1.0
SG A:CYS107 2.4 29.7 1.0
CE1 A:HIS100 2.7 17.5 1.0
CB A:CYS80 3.2 18.2 1.0
CD2 A:HIS100 3.2 19.1 1.0
CB A:CYS107 3.2 30.9 1.0
CB A:CYS83 3.4 23.1 1.0
ND1 A:HIS100 3.9 22.2 1.0
N A:CYS83 3.9 21.9 1.0
CG1 A:VAL85 4.0 20.0 1.0
CG A:HIS100 4.2 25.1 1.0
CA A:CYS83 4.2 20.8 1.0
CA A:CYS107 4.5 30.0 1.0
CA A:CYS80 4.6 16.9 1.0
CB A:PHE82 4.8 18.1 1.0
C A:PHE82 4.8 19.8 1.0
CB A:VAL85 5.0 22.5 1.0
C A:CYS83 5.0 21.3 1.0

Zinc binding site 2 out of 6 in 3siq

Go back to Zinc Binding Sites List in 3siq
Zinc binding site 2 out of 6 in the Crystal Structure of Autoinhibited DIAP1-BIR1 Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Autoinhibited DIAP1-BIR1 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn200

b:38.8
occ:1.00
 SG B:CYS80 2.2 31.4 1.0
SG B:CYS107 2.3 37.3 1.0
SG B:CYS83 2.3 34.6 1.0
NE2 B:HIS100 2.3 25.6 1.0
CE1 B:HIS100 2.8 25.3 1.0
CB B:CYS80 3.0 30.6 1.0
CB B:CYS83 3.3 35.5 1.0
N B:CYS83 3.5 34.7 1.0
CB B:CYS107 3.6 33.6 1.0
CD2 B:HIS100 3.6 27.2 1.0
CA B:CYS83 4.0 34.5 1.0
ND1 B:HIS100 4.1 27.0 1.0
CA B:CYS80 4.4 30.9 1.0
CB B:PHE82 4.5 34.1 1.0
CG B:HIS100 4.5 27.2 1.0
C B:PHE82 4.6 35.2 1.0
C B:CYS83 4.7 33.8 1.0
N B:GLY84 4.8 32.1 1.0
CA B:CYS107 4.8 34.5 1.0
CG1 B:VAL85 4.8 27.2 1.0
CG B:LEU110 4.9 34.9 1.0
CA B:PHE82 4.9 34.0 1.0
N B:PHE82 4.9 34.3 1.0
CD1 B:LEU110 4.9 32.6 1.0
C B:CYS80 4.9 31.6 1.0

Zinc binding site 3 out of 6 in 3siq

Go back to Zinc Binding Sites List in 3siq
Zinc binding site 3 out of 6 in the Crystal Structure of Autoinhibited DIAP1-BIR1 Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Autoinhibited DIAP1-BIR1 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn200

b:29.6
occ:1.00
 SG C:CYS80 2.1 23.8 1.0
SG C:CYS83 2.2 21.6 1.0
NE2 C:HIS100 2.2 16.8 1.0
SG C:CYS107 2.4 31.6 1.0
CE1 C:HIS100 2.9 18.9 1.0
CB C:CYS80 3.1 18.1 1.0
CD2 C:HIS100 3.4 22.5 1.0
CB C:CYS83 3.5 21.8 1.0
CB C:CYS107 3.6 32.0 1.0
N C:CYS83 3.9 21.7 1.0
ND1 C:HIS100 4.1 23.2 1.0
CA C:CYS83 4.3 21.7 1.0
CG C:HIS100 4.4 25.2 1.0
CB C:PHE82 4.6 19.1 1.0
CA C:CYS80 4.6 19.1 1.0
C C:PHE82 4.6 19.9 1.0
CA C:CYS107 4.8 31.6 1.0
OG C:SER104 4.8 33.0 1.0
CA C:PHE82 4.9 20.4 1.0
N C:PHE82 5.0 19.0 1.0
CD2 C:LEU110 5.0 25.4 1.0
O C:THR67 5.0 19.9 1.0
CB C:SER104 5.0 31.8 1.0

Zinc binding site 4 out of 6 in 3siq

Go back to Zinc Binding Sites List in 3siq
Zinc binding site 4 out of 6 in the Crystal Structure of Autoinhibited DIAP1-BIR1 Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Autoinhibited DIAP1-BIR1 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn200

b:40.7
occ:1.00
 SG D:CYS83 2.1 32.2 1.0
SG D:CYS80 2.2 29.6 1.0
NE2 D:HIS100 2.2 23.1 1.0
SG D:CYS107 2.4 28.5 1.0
CE1 D:HIS100 2.6 24.3 1.0
CB D:CYS80 3.1 26.7 1.0
CB D:CYS107 3.1 30.9 1.0
CB D:CYS83 3.2 29.7 1.0
CD2 D:HIS100 3.5 25.4 1.0
N D:CYS83 3.8 30.8 1.0
ND1 D:HIS100 3.9 28.7 1.0
CA D:CYS83 4.1 30.0 1.0
CG1 D:VAL85 4.3 24.1 1.0
CG D:HIS100 4.3 27.2 1.0
CA D:CYS107 4.4 32.5 1.0
C D:PHE82 4.5 31.4 1.0
CB D:PHE82 4.5 30.9 1.0
CA D:CYS80 4.6 28.9 1.0
C D:CYS83 4.7 29.8 1.0
N D:PHE82 4.8 32.0 1.0
CA D:PHE82 4.9 31.6 1.0
CB D:VAL85 4.9 29.0 1.0
N D:GLY84 5.0 26.6 1.0
C D:CYS80 5.0 30.6 1.0

Zinc binding site 5 out of 6 in 3siq

Go back to Zinc Binding Sites List in 3siq
Zinc binding site 5 out of 6 in the Crystal Structure of Autoinhibited DIAP1-BIR1 Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Autoinhibited DIAP1-BIR1 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn200

b:28.9
occ:1.00
 NE2 E:HIS100 2.0 20.3 1.0
SG E:CYS83 2.1 29.9 1.0
SG E:CYS107 2.1 35.6 1.0
CE1 E:HIS100 2.2 21.7 1.0
SG E:CYS80 2.2 24.7 1.0
CB E:CYS80 3.2 18.6 1.0
CD2 E:HIS100 3.3 16.0 1.0
CB E:CYS107 3.4 32.5 1.0
CB E:CYS83 3.5 24.1 1.0
ND1 E:HIS100 3.5 25.9 1.0
N E:CYS83 4.0 20.7 1.0
CG E:HIS100 4.1 24.6 1.0
CA E:CYS83 4.3 21.4 1.0
CB E:PHE82 4.5 17.5 1.0
CE E:MET69 4.5 15.1 1.0
CG1 E:VAL85 4.6 23.2 1.0
CA E:CYS107 4.6 32.4 1.0
C E:PHE82 4.6 21.3 1.0
CD2 E:LEU110 4.7 26.5 1.0
CA E:CYS80 4.7 19.0 1.0
N E:PHE82 4.8 19.2 1.0
CA E:PHE82 4.8 20.2 1.0

Zinc binding site 6 out of 6 in 3siq

Go back to Zinc Binding Sites List in 3siq
Zinc binding site 6 out of 6 in the Crystal Structure of Autoinhibited DIAP1-BIR1 Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Autoinhibited DIAP1-BIR1 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn200

b:35.7
occ:1.00
 NE2 F:HIS100 2.0 31.4 1.0
SG F:CYS80 2.1 32.5 1.0
SG F:CYS83 2.2 38.9 1.0
CE1 F:HIS100 2.4 27.8 1.0
SG F:CYS107 2.6 32.7 1.0
CB F:CYS80 3.0 27.9 1.0
CB F:CYS83 3.3 33.4 1.0
CD2 F:HIS100 3.4 34.1 1.0
CB F:CYS107 3.5 33.5 1.0
N F:CYS83 3.6 33.6 1.0
ND1 F:HIS100 3.7 30.4 1.0
CA F:CYS83 4.0 33.0 1.0
CG F:HIS100 4.2 27.7 1.0
CA F:CYS80 4.5 29.6 1.0
C F:PHE82 4.5 33.4 1.0
CB F:PHE82 4.5 33.4 1.0
CG1 F:VAL85 4.6 31.1 1.0
N F:GLY84 4.6 31.9 1.0
N F:PHE82 4.7 32.1 1.0
C F:CYS83 4.7 32.8 1.0
CA F:CYS107 4.7 33.5 1.0
CA F:PHE82 4.8 32.3 1.0
C F:CYS80 4.9 30.9 1.0
OG F:SER104 5.0 36.8 1.0
O F:THR67 5.0 26.7 1.0

Reference:

X.Li, J.Wang, Y.Shi. Structural Mechanisms of DIAP1 Auto-Inhibition and DIAP1-Mediated Inhibition of Drice. Nat Commun V. 2 408 2011.
ISSN: ESSN 2041-1723
PubMed: 21811237
DOI: 10.1038/NCOMMS1418
Page generated: Sat Oct 26 15:48:08 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy