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Zinc in PDB 3scp: Crystal Structure of Rice BGLU1 E386A Mutant

Enzymatic activity of Crystal Structure of Rice BGLU1 E386A Mutant

All present enzymatic activity of Crystal Structure of Rice BGLU1 E386A Mutant:
3.2.1.21;

Protein crystallography data

The structure of Crystal Structure of Rice BGLU1 E386A Mutant, PDB code: 3scp was solved by S.Pengthaisong, S.G.Withers, B.Kuaprasert, J.R.Ketudat Cairns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 79.619, 100.939, 127.568, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 21.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Rice BGLU1 E386A Mutant (pdb code 3scp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Rice BGLU1 E386A Mutant, PDB code: 3scp:

Zinc binding site 1 out of 1 in 3scp

Go back to Zinc Binding Sites List in 3scp
Zinc binding site 1 out of 1 in the Crystal Structure of Rice BGLU1 E386A Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Rice BGLU1 E386A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:8.9
occ:1.00
OD2 B:ASP65 2.0 7.6 1.0
OD2 A:ASP65 2.0 7.1 1.0
ND1 B:HIS68 2.0 9.5 1.0
ND1 A:HIS68 2.1 9.9 1.0
CG B:ASP65 2.7 6.1 1.0
CG A:ASP65 2.8 6.1 1.0
OD1 B:ASP65 2.8 7.1 1.0
OD1 A:ASP65 2.8 7.5 1.0
CE1 B:HIS68 3.0 11.4 1.0
CE1 A:HIS68 3.0 10.8 1.0
CG B:HIS68 3.1 8.9 1.0
CG A:HIS68 3.1 8.8 1.0
CB B:HIS68 3.4 8.8 1.0
CB A:HIS68 3.5 8.8 1.0
O B:HOH843 4.0 10.1 1.0
NE2 B:HIS68 4.1 10.7 1.0
NE2 A:HIS68 4.1 10.5 1.0
O A:HOH477 4.1 12.9 1.0
CD2 B:HIS68 4.2 8.8 1.0
CB B:ASP65 4.2 5.7 1.0
CD2 A:HIS68 4.2 8.9 1.0
CB A:ASP65 4.2 5.7 1.0
O A:HOH664 4.7 12.0 1.0
O B:HOH615 4.8 12.3 1.0
CA B:HIS68 4.8 9.5 1.0
CA A:HIS68 4.8 9.5 1.0
N B:HIS68 5.0 8.6 1.0

Reference:

S.Pengthaisong, S.G.Withers, B.Kuaprasert, J.R.Ketudat Cairns. Structural Investigation of the Basis For Cellooligosaccharide Synthesis By Rice BGLU1 Glycosynthases To Be Published.
Page generated: Wed Dec 16 04:49:53 2020

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