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Zinc in PDB 3sck: Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2

Enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2

All present enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2:
3.4.17.23;

Protein crystallography data

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3sck was solved by K.Wu, G.Peng, M.Wilken, R.Geraghty, F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.27 / 3.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 81.219, 119.277, 113.236, 90.00, 92.19, 90.00
R / Rfree (%) 23.9 / 28.5

Other elements in 3sck:

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 (pdb code 3sck). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3sck:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3sck

Go back to Zinc Binding Sites List in 3sck
Zinc binding site 1 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn901

b:0.1
occ:1.00
NE2 A:HIS378 2.4 67.4 1.0
NE2 A:HIS374 2.4 67.0 1.0
OE1 A:GLU402 2.4 58.5 1.0
OE2 A:GLU402 2.6 63.5 1.0
CD A:GLU402 2.9 62.9 1.0
CE1 A:HIS374 3.2 66.7 1.0
CD2 A:HIS378 3.3 69.6 1.0
CE1 A:HIS378 3.3 67.4 1.0
OE1 A:GLU375 3.4 77.8 1.0
CD2 A:HIS374 3.5 66.2 1.0
ND1 A:HIS374 4.3 65.5 1.0
CG A:GLU402 4.3 67.3 1.0
ND1 A:HIS378 4.4 68.6 1.0
CG A:HIS374 4.5 65.8 1.0
CG A:HIS378 4.5 71.0 1.0
CD A:GLU375 4.5 77.5 1.0
OE2 A:GLU375 4.8 79.4 1.0

Zinc binding site 2 out of 2 in 3sck

Go back to Zinc Binding Sites List in 3sck
Zinc binding site 2 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn901

b:98.6
occ:1.00
OE1 B:GLU402 2.3 63.3 1.0
NE2 B:HIS378 2.6 72.2 1.0
OE2 B:GLU402 2.6 66.6 1.0
CD B:GLU402 2.8 65.9 1.0
NE2 B:HIS374 2.8 65.9 1.0
OE1 B:GLU375 3.1 78.8 1.0
CD2 B:HIS378 3.4 72.0 1.0
CE1 B:HIS374 3.6 67.3 1.0
CE1 B:HIS378 3.7 73.1 1.0
CD2 B:HIS374 3.7 66.9 1.0
CD B:GLU375 4.1 76.7 1.0
CG B:GLU402 4.2 68.6 1.0
OE2 B:GLU375 4.3 76.3 1.0
CG B:HIS378 4.6 73.4 1.0
ND1 B:HIS374 4.6 69.5 1.0
ND1 B:HIS378 4.7 72.8 1.0
CG B:HIS374 4.7 69.9 1.0

Reference:

K.Wu, G.Peng, M.Wilken, R.Geraghty, F.Li. Sars Coronavirus: Mechanism of Host Receptor Adaptation and Rational Prediction of Future Evolution To Be Published.
Page generated: Wed Dec 16 04:49:49 2020

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