Zinc in PDB 3rms: Crystal Structure of Uncharacterized Protein SVIR_20580 From Saccharomonospora Viridis

The structure of Crystal Structure of Uncharacterized Protein SVIR_20580 From Saccharomonospora Viridis, PDB code: 3rms was solved by K.Michalska, A.Weger, C.Hatzos-Skintges, J.Bearden, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.44 / 2.13
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	44.630, 60.968, 73.209, 90.00, 96.77, 90.00
R / Rfree (%)	17.7 / 20.5

The binding sites of Zinc atom in the Crystal Structure of Uncharacterized Protein SVIR_20580 From Saccharomonospora Viridis (pdb code 3rms). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of Uncharacterized Protein SVIR_20580 From Saccharomonospora Viridis, PDB code: 3rms:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Crystal Structure of Uncharacterized Protein SVIR_20580 From Saccharomonospora Viridis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Uncharacterized Protein SVIR_20580 From Saccharomonospora Viridis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn114 b:23.0 occ:1.00 ND1 A:HIS14 2.1 24.6 1.0 SG A:CYS59 2.2 25.7 1.0 SG A:CYS56 2.3 25.3 1.0 SG A:CYS33 2.3 26.9 1.0 CE1 A:HIS14 3.0 30.1 1.0 CB A:CYS33 3.1 27.0 1.0 CB A:CYS56 3.2 24.2 1.0 CG A:HIS14 3.2 23.2 1.0 CB A:CYS59 3.3 25.2 1.0 CB A:HIS14 3.6 23.1 1.0 N A:CYS59 3.9 27.3 1.0 CB A:ALA31 4.0 25.1 1.0 N A:CYS33 4.1 28.9 1.0 CA A:HIS14 4.1 23.8 1.0 NE2 A:HIS14 4.1 28.7 1.0 CA A:CYS59 4.1 28.0 1.0 CA A:CYS33 4.2 30.1 1.0 CD2 A:HIS14 4.3 23.2 1.0 CA A:CYS56 4.6 27.8 1.0 N A:VAL15 4.8 24.8 1.0

Zinc binding site 2 out of 3 in the Crystal Structure of Uncharacterized Protein SVIR_20580 From Saccharomonospora Viridis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Uncharacterized Protein SVIR_20580 From Saccharomonospora Viridis within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn114 b:23.9 occ:1.00 ND1 B:HIS14 2.0 25.9 1.0 SG B:CYS56 2.2 23.3 1.0 SG B:CYS59 2.3 26.2 1.0 SG B:CYS33 2.4 31.1 1.0 CE1 B:HIS14 2.7 30.9 1.0 CB B:CYS56 3.1 25.6 1.0 CB B:CYS33 3.1 31.8 1.0 CG B:HIS14 3.2 25.6 1.0 CB B:CYS59 3.3 25.5 1.0 CB B:HIS14 3.7 24.9 1.0 NE2 B:HIS14 4.0 26.6 1.0 N B:CYS59 4.0 27.5 1.0 CB B:ALA31 4.0 25.2 1.0 N B:CYS33 4.1 29.0 1.0 CD2 B:HIS14 4.2 26.1 1.0 CA B:CYS59 4.2 26.9 1.0 CA B:HIS14 4.2 23.9 1.0 CA B:CYS33 4.2 31.3 1.0 CA B:CYS56 4.6 26.2 1.0 N B:VAL15 4.8 23.6 1.0

Zinc binding site 3 out of 3 in the Crystal Structure of Uncharacterized Protein SVIR_20580 From Saccharomonospora Viridis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Uncharacterized Protein SVIR_20580 From Saccharomonospora Viridis within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn114 b:25.3 occ:1.00 ND1 C:HIS14 2.1 23.6 1.0 SG C:CYS59 2.3 25.6 1.0 SG C:CYS33 2.3 29.4 1.0 SG C:CYS56 2.3 28.5 1.0 CE1 C:HIS14 3.0 27.7 1.0 CB C:CYS56 3.1 27.7 1.0 CB C:CYS33 3.1 31.9 1.0 CG C:HIS14 3.2 22.8 1.0 CB C:CYS59 3.5 25.0 1.0 CB C:HIS14 3.7 21.9 1.0 N C:CYS59 4.0 27.3 1.0 CB C:ALA31 4.0 25.6 1.0 NE2 C:HIS14 4.1 27.1 1.0 N C:CYS33 4.2 28.6 1.0 CA C:HIS14 4.2 23.5 1.0 CA C:CYS59 4.2 25.9 1.0 CA C:CYS33 4.2 30.7 1.0 CD2 C:HIS14 4.3 24.6 1.0 CA C:CYS56 4.6 27.0 1.0 N C:VAL15 4.9 25.3 1.0

K.Michalska, A.Weger, C.Hatzos-Skintges, J.Bearden, A.Joachimiak. Crystal Structure of Uncharacterized Protein SVIR_20580 From Saccharomonospora Viridis To Be Published.