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Zinc in PDB 3rcm: Crystal Structure of Efi Target 500140:Tatd Family Hydrolase From Pseudomonas Putida

Protein crystallography data

The structure of Crystal Structure of Efi Target 500140:Tatd Family Hydrolase From Pseudomonas Putida, PDB code: 3rcm was solved by J.Kim, R.Toro, B.Hillerich, R.D.Seidel, J.A.Gerlt, S.C.Almo, Enzymefunction Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.55 / 2.05
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.007, 62.643, 88.570, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 22.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Efi Target 500140:Tatd Family Hydrolase From Pseudomonas Putida (pdb code 3rcm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Efi Target 500140:Tatd Family Hydrolase From Pseudomonas Putida, PDB code: 3rcm:

Zinc binding site 1 out of 1 in 3rcm

Go back to Zinc Binding Sites List in 3rcm
Zinc binding site 1 out of 1 in the Crystal Structure of Efi Target 500140:Tatd Family Hydrolase From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Efi Target 500140:Tatd Family Hydrolase From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn288

b:22.5
occ:1.00
OE1 A:GLU97 1.8 18.4 1.0
NE2 A:HIS158 2.0 15.5 1.0
ND1 A:HIS133 2.1 16.8 1.0
O4 A:CIT289 2.3 28.4 1.0
O3 A:CIT289 2.7 39.3 1.0
CD A:GLU97 2.8 15.7 1.0
C5 A:CIT289 2.9 41.1 1.0
CD2 A:HIS158 3.0 12.6 1.0
CE1 A:HIS158 3.0 12.4 1.0
CE1 A:HIS133 3.1 20.7 1.0
CG A:HIS133 3.1 15.9 1.0
OE2 A:GLU97 3.2 18.0 1.0
CB A:HIS133 3.4 9.2 1.0
CG A:GLU97 4.0 11.4 1.0
O A:HOH416 4.1 29.5 1.0
NE2 A:HIS68 4.1 13.6 1.0
ND1 A:HIS158 4.1 12.6 1.0
CG A:HIS158 4.2 12.6 1.0
NE2 A:HIS133 4.2 22.6 1.0
CD2 A:HIS133 4.3 19.7 1.0
CA A:HIS133 4.3 11.7 1.0
C4 A:CIT289 4.4 44.2 1.0
O5 A:CIT289 4.5 52.5 1.0
CD2 A:HIS68 4.5 14.9 1.0
O A:HOH350 4.7 32.0 1.0
C6 A:CIT289 4.7 49.8 1.0
OD1 A:ASP209 4.9 26.2 1.0

Reference:

J.Kim, R.Toro, B.Hillerich, R.D.Seidel, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of Efi Target 500140:Tatd Family Hydrolase From Pseudomonas Putida To Be Published.
Page generated: Wed Dec 16 04:47:08 2020

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