Atomistry » Zinc » PDB 3qla-3qym » 3qw0
Atomistry »
  Zinc »
    PDB 3qla-3qym »
      3qw0 »

Zinc in PDB 3qw0: Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmb Crosslinks

Protein crystallography data

The structure of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmb Crosslinks, PDB code: 3qw0 was solved by E.N.Salgado, F.A.Tezcan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.50 / 1.84
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 63.626, 76.399, 93.265, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 24.3

Other elements in 3qw0:

The structure of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmb Crosslinks also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmb Crosslinks (pdb code 3qw0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmb Crosslinks, PDB code: 3qw0:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 3qw0

Go back to Zinc Binding Sites List in 3qw0
Zinc binding site 1 out of 4 in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmb Crosslinks


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmb Crosslinks within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn500

b:12.5
occ:1.00
NE2 A:HIS73 1.9 15.6 1.0
NE2 D:HIS63 2.0 5.8 1.0
OD2 C:ASP74 2.1 15.2 1.0
NE2 A:HIS77 2.1 13.1 1.0
OD1 C:ASP74 2.4 18.6 1.0
CG C:ASP74 2.6 14.0 1.0
CE1 A:HIS73 2.8 20.0 1.0
CD2 D:HIS63 3.0 11.1 1.0
CD2 A:HIS73 3.0 14.7 1.0
CE1 D:HIS63 3.0 14.2 1.0
CD2 A:HIS77 3.0 12.2 1.0
CE1 A:HIS77 3.2 13.9 1.0
ND1 A:HIS73 4.0 16.7 1.0
CG A:HIS73 4.1 13.9 1.0
ND1 D:HIS63 4.1 14.6 1.0
CB C:ASP74 4.1 14.6 1.0
CG D:HIS63 4.1 13.8 1.0
CG A:HIS77 4.2 8.2 1.0
ND1 A:HIS77 4.2 11.2 1.0
O C:HOH409 4.2 25.2 1.0
O C:HOH378 4.3 24.6 1.0
O A:HOH143 4.6 22.9 1.0
CD1 D:ILE67 4.7 17.4 1.0
CA C:ASP74 4.8 12.8 1.0
O C:ASP74 4.9 11.6 1.0

Zinc binding site 2 out of 4 in 3qw0

Go back to Zinc Binding Sites List in 3qw0
Zinc binding site 2 out of 4 in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmb Crosslinks


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmb Crosslinks within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn500

b:15.1
occ:1.00
NE2 C:HIS63 2.0 12.1 1.0
NE2 B:HIS73 2.1 12.7 1.0
NE2 B:HIS77 2.1 11.2 1.0
OD2 D:ASP74 2.2 15.1 1.0
OD1 D:ASP74 2.5 17.9 1.0
CG D:ASP74 2.6 13.6 1.0
CD2 C:HIS63 2.9 10.2 1.0
CD2 B:HIS77 3.0 7.4 1.0
CE1 B:HIS73 3.0 15.3 1.0
CD2 B:HIS73 3.0 12.2 1.0
CE1 C:HIS63 3.1 10.5 1.0
CE1 B:HIS77 3.1 12.0 1.0
CG C:HIS63 4.1 13.2 1.0
ND1 C:HIS63 4.1 11.4 1.0
ND1 B:HIS73 4.1 14.9 1.0
ND1 B:HIS77 4.2 10.4 1.0
CB D:ASP74 4.2 13.5 1.0
CG B:HIS77 4.2 11.9 1.0
O D:HOH324 4.2 31.1 1.0
CG B:HIS73 4.2 14.2 1.0
O B:HOH359 4.4 29.7 1.0
CD1 C:ILE67 4.6 15.2 1.0
O D:ASP74 4.7 13.6 1.0
O D:HOH148 4.8 19.0 1.0
CA D:ASP74 4.8 14.2 1.0

Zinc binding site 3 out of 4 in 3qw0

Go back to Zinc Binding Sites List in 3qw0
Zinc binding site 3 out of 4 in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmb Crosslinks


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmb Crosslinks within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn500

b:12.6
occ:1.00
NE2 B:HIS63 1.9 9.1 1.0
OD2 A:ASP74 2.0 12.8 1.0
NE2 C:HIS77 2.0 12.9 1.0
NE2 C:HIS73 2.0 9.9 1.0
CG A:ASP74 2.7 14.7 1.0
OD1 A:ASP74 2.8 16.6 1.0
CD2 B:HIS63 2.9 9.4 1.0
CE1 B:HIS63 2.9 10.9 1.0
CE1 C:HIS73 3.0 12.8 1.0
CD2 C:HIS77 3.0 11.0 1.0
CE1 C:HIS77 3.0 9.7 1.0
CD2 C:HIS73 3.1 5.0 1.0
ND1 B:HIS63 4.0 13.1 1.0
CG B:HIS63 4.0 10.7 1.0
ND1 C:HIS73 4.1 12.3 1.0
O A:HOH143 4.1 22.9 1.0
ND1 C:HIS77 4.1 10.3 1.0
CG C:HIS77 4.2 8.3 1.0
CB A:ASP74 4.2 12.5 1.0
CD1 B:ILE67 4.2 12.7 1.0
CG C:HIS73 4.2 8.9 1.0
O C:HOH242 4.4 30.2 1.0
O C:HOH378 4.5 24.6 1.0
O A:HOH174 4.7 20.7 1.0
CA A:ASP74 4.8 10.9 1.0
O A:ASP74 4.8 11.8 1.0

Zinc binding site 4 out of 4 in 3qw0

Go back to Zinc Binding Sites List in 3qw0
Zinc binding site 4 out of 4 in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmb Crosslinks


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmb Crosslinks within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn500

b:13.4
occ:1.00
NE2 D:HIS73 1.9 12.2 1.0
NE2 D:HIS77 2.0 8.9 1.0
NE2 A:HIS63 2.0 12.8 1.0
OD2 B:ASP74 2.2 13.8 1.0
OD1 B:ASP74 2.3 18.1 1.0
CG B:ASP74 2.6 12.3 1.0
CE1 D:HIS73 2.8 24.2 1.0
CD2 A:HIS63 2.9 11.0 1.0
CE1 D:HIS77 3.0 13.1 1.0
CD2 D:HIS73 3.0 17.6 1.0
CD2 D:HIS77 3.0 6.9 1.0
CE1 A:HIS63 3.1 11.3 1.0
ND1 D:HIS73 4.0 23.6 1.0
CB B:ASP74 4.1 12.3 1.0
CG A:HIS63 4.1 11.3 1.0
CG D:HIS73 4.1 17.1 1.0
ND1 D:HIS77 4.1 9.7 1.0
ND1 A:HIS63 4.1 10.7 1.0
CG D:HIS77 4.2 13.2 1.0
O D:HOH165 4.3 23.8 1.0
O B:HOH359 4.5 29.7 1.0
O D:HOH324 4.7 31.1 1.0
O B:ASP74 4.7 12.0 1.0
CA B:ASP74 4.8 12.4 1.0
O B:HOH221 4.8 22.1 1.0
CD1 A:ILE67 4.9 14.9 1.0
O B:HOH266 4.9 25.1 1.0

Reference:

E.N.Salgado, J.D.Brodin, M.M.To, F.A.Tezcan. Templated Construction of A Zn-Selective Protein Dimerization Motif. Inorg.Chem. V. 50 6323 2011.
ISSN: ISSN 0020-1669
PubMed: 21648390
DOI: 10.1021/IC200746M
Page generated: Wed Dec 16 04:46:09 2020

Last articles

Zn in 7NN0
Zn in 7NIO
Zn in 7LUP
Zn in 7M1Y
Zn in 7LO4
Zn in 7KWO
Zn in 7KJY
Zn in 7KCQ
Zn in 7KC2
Zn in 7KCB
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy