Atomistry » Zinc » PDB 3pt9-3q7a » 3q02
Atomistry »
  Zinc »
    PDB 3pt9-3q7a »
      3q02 »

Zinc in PDB 3q02: Crystal Structure of Plasminogen Activator Inhibitor-1 in A Metastable Active Conformation.

Protein crystallography data

The structure of Crystal Structure of Plasminogen Activator Inhibitor-1 in A Metastable Active Conformation., PDB code: 3q02 was solved by J.K.Jensen, J.P.Morth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.94 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 77.438, 67.172, 90.357, 90.00, 98.50, 90.00
R / Rfree (%) 19.3 / 23.8

Other elements in 3q02:

The structure of Crystal Structure of Plasminogen Activator Inhibitor-1 in A Metastable Active Conformation. also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Plasminogen Activator Inhibitor-1 in A Metastable Active Conformation. (pdb code 3q02). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Plasminogen Activator Inhibitor-1 in A Metastable Active Conformation., PDB code: 3q02:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3q02

Go back to Zinc Binding Sites List in 3q02
Zinc binding site 1 out of 2 in the Crystal Structure of Plasminogen Activator Inhibitor-1 in A Metastable Active Conformation.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Plasminogen Activator Inhibitor-1 in A Metastable Active Conformation. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn380

b:86.1
occ:1.00
NE2 B:HIS229 2.4 57.5 1.0
NE2 A:HIS261 2.7 41.2 1.0
O B:HOH418 2.9 63.0 1.0
O A:HOH438 3.1 63.2 1.0
CE1 B:HIS229 3.2 57.6 1.0
CD2 B:HIS229 3.4 55.0 1.0
CD2 A:HIS261 3.5 40.7 1.0
CE1 A:HIS261 3.9 44.1 1.0
CG A:GLN257 4.4 50.5 1.0
ND1 B:HIS229 4.4 54.1 1.0
CG B:HIS229 4.5 48.7 1.0
CD A:GLN257 4.6 62.0 1.0
CG A:HIS261 4.7 42.3 1.0
OE1 A:GLN257 4.7 68.3 1.0
ND1 A:HIS261 4.9 43.3 1.0

Zinc binding site 2 out of 2 in 3q02

Go back to Zinc Binding Sites List in 3q02
Zinc binding site 2 out of 2 in the Crystal Structure of Plasminogen Activator Inhibitor-1 in A Metastable Active Conformation.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Plasminogen Activator Inhibitor-1 in A Metastable Active Conformation. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn381

b:76.9
occ:1.00
N B:HIS2 2.2 77.4 1.0
N B:VAL1 2.2 42.6 1.0
CA B:VAL1 2.5 60.8 1.0
OE2 A:GLU212 2.6 74.6 1.0
OE1 A:GLU212 2.6 76.1 1.0
C B:VAL1 2.7 71.0 1.0
CD A:GLU212 2.9 74.0 1.0
ND1 B:HIS3 3.0 0.1 1.0
CG B:HIS2 3.3 98.8 1.0
CA B:HIS2 3.3 78.3 1.0
CD2 B:HIS2 3.4 0.2 1.0
ND1 B:HIS2 3.4 0.3 1.0
NE2 B:HIS2 3.6 98.0 1.0
CE1 B:HIS3 3.6 0.8 1.0
N B:HIS3 3.6 78.3 1.0
CE1 B:HIS2 3.6 99.9 1.0
C B:HIS2 3.8 77.8 1.0
O B:VAL1 3.8 66.8 1.0
CB B:HIS2 3.8 90.0 1.0
CB B:VAL1 4.0 65.4 1.0
CG B:HIS3 4.1 99.4 1.0
OG B:SER6 4.2 77.2 1.0
CG A:GLU212 4.4 68.4 1.0
O B:PRO366 4.4 47.0 1.0
CB B:HIS3 4.5 90.0 1.0
CA B:HIS3 4.7 81.1 1.0
CG2 B:VAL1 4.7 73.9 1.0
CG1 B:VAL1 4.7 60.7 1.0
O B:HIS2 4.7 82.1 1.0
NE2 B:HIS3 4.8 0.4 1.0

Reference:

J.K.Jensen, L.C.Thompson, J.C.Bucci, P.Nissen, P.G.Gettins, C.B.Peterson, P.A.Andreasen, J.P.Morth. Crystal Structure of Plasminogen Activator Inhibitor-1 in An Active Conformation with Normal Thermodynamic Stability. J.Biol.Chem. V. 286 29709 2011.
ISSN: ISSN 0021-9258
PubMed: 21697084
DOI: 10.1074/JBC.M111.236554
Page generated: Wed Dec 16 04:44:19 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy