Atomistry » Zinc » PDB 3pfo-3pt6 » 3pm6
Atomistry »
  Zinc »
    PDB 3pfo-3pt6 »
      3pm6 »

Zinc in PDB 3pm6: Crystal Structure of A Putative Fructose-1,6-Biphosphate Aldolase From Coccidioides Immitis Solved By Combined Sad Mr

Enzymatic activity of Crystal Structure of A Putative Fructose-1,6-Biphosphate Aldolase From Coccidioides Immitis Solved By Combined Sad Mr

All present enzymatic activity of Crystal Structure of A Putative Fructose-1,6-Biphosphate Aldolase From Coccidioides Immitis Solved By Combined Sad Mr:
4.1.2.13;

Protein crystallography data

The structure of Crystal Structure of A Putative Fructose-1,6-Biphosphate Aldolase From Coccidioides Immitis Solved By Combined Sad Mr, PDB code: 3pm6 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 57.910, 77.770, 68.320, 90.00, 93.71, 90.00
R / Rfree (%) 19.8 / 23.7

Other elements in 3pm6:

The structure of Crystal Structure of A Putative Fructose-1,6-Biphosphate Aldolase From Coccidioides Immitis Solved By Combined Sad Mr also contains other interesting chemical elements:

Iodine (I) 33 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Putative Fructose-1,6-Biphosphate Aldolase From Coccidioides Immitis Solved By Combined Sad Mr (pdb code 3pm6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Putative Fructose-1,6-Biphosphate Aldolase From Coccidioides Immitis Solved By Combined Sad Mr, PDB code: 3pm6:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3pm6

Go back to Zinc Binding Sites List in 3pm6
Zinc binding site 1 out of 2 in the Crystal Structure of A Putative Fructose-1,6-Biphosphate Aldolase From Coccidioides Immitis Solved By Combined Sad Mr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Fructose-1,6-Biphosphate Aldolase From Coccidioides Immitis Solved By Combined Sad Mr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn319

b:20.8
occ:1.00
 ND1 A:HIS223 2.1 9.2 1.0
NE2 A:HIS87 2.1 13.2 1.0
NE2 A:HIS192 2.2 13.8 1.0
CE1 A:HIS223 3.0 11.3 1.0
CE1 A:HIS87 3.0 11.0 1.0
CD2 A:HIS192 3.1 12.9 1.0
CD2 A:HIS87 3.2 10.5 1.0
CG A:HIS223 3.2 12.1 1.0
CE1 A:HIS192 3.2 12.9 1.0
CB A:HIS223 3.6 13.6 1.0
NE2 A:HIS223 4.1 12.4 1.0
ND1 A:HIS87 4.1 11.6 1.0
OD2 A:ASP86 4.2 13.4 1.0
CG A:HIS192 4.2 15.7 1.0
CG A:HIS87 4.3 12.8 1.0
ND1 A:HIS192 4.3 14.9 1.0
CD2 A:HIS223 4.3 10.1 1.0
ND2 A:ASN245 4.3 10.4 1.0
OD1 A:ASP86 4.4 13.3 1.0
CA A:HIS223 4.4 14.7 1.0
N A:GLY224 4.7 13.7 1.0
CG A:ASP86 4.7 13.6 1.0

Zinc binding site 2 out of 2 in 3pm6

Go back to Zinc Binding Sites List in 3pm6
Zinc binding site 2 out of 2 in the Crystal Structure of A Putative Fructose-1,6-Biphosphate Aldolase From Coccidioides Immitis Solved By Combined Sad Mr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Putative Fructose-1,6-Biphosphate Aldolase From Coccidioides Immitis Solved By Combined Sad Mr within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn320

b:47.8
occ:1.00
 NE2 B:HIS87 2.1 30.8 1.0
ND1 B:HIS223 2.3 32.1 1.0
O B:HOH400 2.5 22.3 1.0
O B:HOH403 2.9 23.1 1.0
O B:HOH402 2.9 18.4 1.0
CE1 B:HIS87 3.0 30.1 1.0
CD2 B:HIS87 3.1 27.7 1.0
CG B:HIS223 3.3 33.1 1.0
CE1 B:HIS223 3.3 31.4 1.0
CB B:HIS223 3.5 34.1 1.0
O B:HOH401 3.8 28.0 1.0
ND1 B:HIS87 4.2 29.8 1.0
CG B:HIS87 4.2 26.4 1.0
OD2 B:ASP86 4.3 24.7 1.0
ND2 B:ASN245 4.3 23.4 1.0
NE2 B:HIS223 4.4 32.8 1.0
CD2 B:HIS223 4.4 33.1 1.0
CA B:HIS223 4.5 34.7 1.0
O B:HOH410 4.6 24.0 1.0
OD1 B:ASP86 4.7 22.9 1.0
N B:GLY224 4.8 37.3 1.0
CG B:ASP86 5.0 24.3 1.0

Reference:

J.Abendroth, A.S.Gardberg, J.I.Robinson, J.S.Christensen, B.L.Staker, P.J.Myler, L.J.Stewart, T.E.Edwards. Sad Phasing Using Iodide Ions in A High-Throughput Structural Genomics Environment. J Struct Funct Genomics V. 12 83 2011.
PubMed: 21359836
DOI: 10.1007/S10969-011-9101-7
Page generated: Wed Dec 16 04:43:19 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy