Atomistry » Zinc » PDB 3pfs-3pta » 3pih
Atomistry »
  Zinc »
    PDB 3pfs-3pta »
      3pih »

Zinc in PDB 3pih: T. Maritima Uvra in Complex with Fluorescein-Modified Dna

Protein crystallography data

The structure of T. Maritima Uvra in Complex with Fluorescein-Modified Dna, PDB code: 3pih was solved by M.Jaciuk, E.Nowak, M.Nowotny, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.08 / 2.90
Space group P 42
Cell size a, b, c (Å), α, β, γ (°) 107.510, 107.510, 108.256, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 26.5

Zinc Binding Sites:

The binding sites of Zinc atom in the T. Maritima Uvra in Complex with Fluorescein-Modified Dna (pdb code 3pih). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the T. Maritima Uvra in Complex with Fluorescein-Modified Dna, PDB code: 3pih:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 3pih

Go back to Zinc Binding Sites List in 3pih
Zinc binding site 1 out of 3 in the T. Maritima Uvra in Complex with Fluorescein-Modified Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of T. Maritima Uvra in Complex with Fluorescein-Modified Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn917

b:68.4
occ:1.00
SG A:CYS719 2.2 74.3 1.0
SG A:CYS716 2.4 78.4 1.0
SG A:CYS742 2.4 65.8 1.0
SG A:CYS739 2.5 80.6 1.0
CB A:CYS716 2.9 70.8 1.0
CB A:CYS742 3.1 65.7 1.0
CB A:CYS739 3.2 64.2 1.0
CB A:CYS719 3.4 73.1 1.0
N A:CYS719 3.7 77.7 1.0
N A:CYS742 3.8 71.6 1.0
CA A:CYS742 4.1 73.5 1.0
CA A:CYS719 4.2 71.3 1.0
CA A:CYS716 4.2 67.2 1.0
CB A:ALA718 4.2 64.0 1.0
O A:CYS716 4.2 70.7 1.0
C A:CYS716 4.4 71.8 1.0
CA A:ARG746 4.5 66.7 1.0
CB A:VAL741 4.5 63.0 1.0
CA A:CYS739 4.6 77.4 1.0
CA A:GLY723 4.7 64.1 1.0
C A:ALA718 4.7 75.4 1.0
N A:GLY723 4.8 56.6 1.0
N A:ALA718 4.8 74.5 1.0
CA A:ALA718 4.8 60.7 1.0
C A:VAL741 4.9 69.6 1.0
N A:ARG746 4.9 69.1 1.0
C A:CYS719 4.9 71.3 1.0

Zinc binding site 2 out of 3 in 3pih

Go back to Zinc Binding Sites List in 3pih
Zinc binding site 2 out of 3 in the T. Maritima Uvra in Complex with Fluorescein-Modified Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of T. Maritima Uvra in Complex with Fluorescein-Modified Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn918

b:70.4
occ:1.00
SG A:CYS384 2.4 67.0 1.0
SG A:CYS387 2.5 61.7 1.0
SG A:CYS279 2.6 61.3 1.0
SG A:CYS276 2.6 70.6 1.0
CB A:CYS279 3.0 66.2 1.0
CB A:CYS276 3.1 64.0 1.0
CB A:CYS387 3.1 56.6 1.0
CB A:CYS384 3.2 77.6 1.0
N A:CYS387 3.7 66.7 1.0
CA A:CYS387 4.0 55.4 1.0
N A:CYS279 4.1 70.2 1.0
CA A:CYS279 4.1 66.2 1.0
OD1 A:ASN278 4.1 76.2 1.0
CA A:CYS276 4.5 60.5 1.0
C A:ASN278 4.6 76.1 1.0
CA A:CYS384 4.6 75.6 1.0
CB A:VAL386 4.8 67.6 1.0
C A:CYS276 4.8 67.3 1.0
C A:CYS279 4.9 70.3 1.0
C A:VAL386 4.9 70.4 1.0
O A:ASN278 4.9 82.8 1.0
O A:CYS276 4.9 66.6 1.0
C A:CYS387 4.9 57.2 1.0
CG A:ASN278 4.9 65.1 1.0
O A:ARG391 5.0 56.6 1.0

Zinc binding site 3 out of 3 in 3pih

Go back to Zinc Binding Sites List in 3pih
Zinc binding site 3 out of 3 in the T. Maritima Uvra in Complex with Fluorescein-Modified Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of T. Maritima Uvra in Complex with Fluorescein-Modified Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn919

b:80.2
occ:0.70
SG A:CYS123 2.3 81.8 1.0
SG A:CYS255 2.4 0.5 1.0
SG A:CYS120 2.6 96.1 1.0
CB A:CYS123 2.8 89.9 1.0
SG A:CYS252 2.9 77.5 1.0
CB A:CYS120 3.5 94.8 1.0
CB A:CYS255 3.7 1.0 1.0
N A:CYS123 3.9 0.3 1.0
CG A:GLU122 3.9 0.4 1.0
CA A:CYS123 3.9 97.2 1.0
CB A:CYS252 4.0 86.7 1.0
OE1 A:GLU122 4.1 0.2 1.0
CB A:VAL254 4.5 86.5 1.0
CD A:GLU122 4.5 0.6 1.0
N A:CYS255 4.6 96.8 1.0
C A:VAL254 4.7 88.5 1.0
CA A:CYS255 4.8 95.9 1.0
C A:CYS123 4.8 99.9 1.0
CA A:CYS120 5.0 88.4 1.0

Reference:

M.Jaciuk, E.Nowak, K.Skowronek, A.Tanska, M.Nowotny. Structure of Uvra Nucleotide Excision Repair Protein in Complex with Modified Dna. Nat.Struct.Mol.Biol. V. 18 191 2011.
ISSN: ISSN 1545-9993
PubMed: 21240268
DOI: 10.1038/NSMB.1973
Page generated: Sat Oct 26 11:27:03 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy