Atomistry » Zinc » PDB 3pfs-3pta » 3pfs
Atomistry »
  Zinc »
    PDB 3pfs-3pta »
      3pfs »

Zinc in PDB 3pfs: Pwwp Domain of Human Bromodomain and Phd Finger-Containing Protein 3

Protein crystallography data

The structure of Pwwp Domain of Human Bromodomain and Phd Finger-Containing Protein 3, PDB code: 3pfs was solved by R.Lam, H.Zeng, J.Kania, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, J.Min, H.Wu, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.63 / 1.90
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.412, 134.522, 30.226, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 25.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Pwwp Domain of Human Bromodomain and Phd Finger-Containing Protein 3 (pdb code 3pfs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Pwwp Domain of Human Bromodomain and Phd Finger-Containing Protein 3, PDB code: 3pfs:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3pfs

Go back to Zinc Binding Sites List in 3pfs
Zinc binding site 1 out of 2 in the Pwwp Domain of Human Bromodomain and Phd Finger-Containing Protein 3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Pwwp Domain of Human Bromodomain and Phd Finger-Containing Protein 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1200

b:20.5
occ:1.00
SG A:CYS1084 2.2 17.7 1.0
CB A:CYS1084 3.2 16.7 1.0
OE1 A:GLN1146 3.7 23.1 1.0
CE2 A:PHE1138 3.7 11.0 1.0
CG A:GLN1146 4.0 17.9 1.0
CD A:GLN1146 4.0 21.3 1.0
CZ A:PHE1138 4.0 10.9 1.0
CB A:GLN1146 4.4 15.5 1.0
CA A:CYS1084 4.6 16.5 1.0
CD2 A:PHE1138 4.6 10.9 1.0
O A:HOH9 4.9 13.8 1.0
NE2 A:GLN1146 4.9 24.2 1.0
CD2 A:TYR1087 4.9 15.9 1.0
CE2 A:TYR1087 4.9 17.0 1.0

Zinc binding site 2 out of 2 in 3pfs

Go back to Zinc Binding Sites List in 3pfs
Zinc binding site 2 out of 2 in the Pwwp Domain of Human Bromodomain and Phd Finger-Containing Protein 3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Pwwp Domain of Human Bromodomain and Phd Finger-Containing Protein 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1200

b:25.5
occ:1.00
SG B:CYS1084 2.1 23.0 1.0
CB B:CYS1084 3.2 21.4 1.0
CE2 B:PHE1138 3.7 10.7 1.0
NE2 B:GLN1146 3.8 20.1 1.0
CG B:GLN1146 4.0 18.1 1.0
CZ B:PHE1138 4.0 10.5 1.0
CD B:GLN1146 4.2 20.9 1.0
CB B:GLN1146 4.2 16.1 1.0
CA B:CYS1084 4.7 20.7 1.0
CD2 B:PHE1138 4.7 10.7 1.0
O B:HOH3 4.9 16.6 1.0

Reference:

H.Wu, H.Zeng, R.Lam, W.Tempel, M.F.Amaya, C.Xu, L.Dombrovski, W.Qiu, Y.Wang, J.Min. Structural and Histone Binding Ability Characterizations of Human Pwwp Domains. Plos One V. 6 18919 2011.
ISSN: ESSN 1932-6203
PubMed: 21720545
DOI: 10.1371/JOURNAL.PONE.0018919
Page generated: Sat Oct 26 11:27:02 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy