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Zinc in PDB 3ohr: Crystal Structure of Fructokinase From Bacillus Subtilis Complexed with Adp

Enzymatic activity of Crystal Structure of Fructokinase From Bacillus Subtilis Complexed with Adp

All present enzymatic activity of Crystal Structure of Fructokinase From Bacillus Subtilis Complexed with Adp:
2.7.1.4;

Protein crystallography data

The structure of Crystal Structure of Fructokinase From Bacillus Subtilis Complexed with Adp, PDB code: 3ohr was solved by B.Nocek, L.Volkart, M.Cuff, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.66
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 112.155, 112.155, 73.716, 90.00, 90.00, 120.00
R / Rfree (%) 16.4 / 18.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Fructokinase From Bacillus Subtilis Complexed with Adp (pdb code 3ohr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Fructokinase From Bacillus Subtilis Complexed with Adp, PDB code: 3ohr:

Zinc binding site 1 out of 1 in 3ohr

Go back to Zinc Binding Sites List in 3ohr
Zinc binding site 1 out of 1 in the Crystal Structure of Fructokinase From Bacillus Subtilis Complexed with Adp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Fructokinase From Bacillus Subtilis Complexed with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:17.3
occ:1.00
ND1 A:HIS171 2.0 18.3 1.0
ND1 A:HIS153 2.1 17.0 1.0
SG A:CYS174 2.3 16.4 1.0
SG A:CYS168 2.3 18.1 1.0
CE1 A:HIS153 2.9 14.3 1.0
CE1 A:HIS171 2.9 17.8 1.0
CG A:HIS171 3.1 17.7 1.0
CG A:HIS153 3.1 17.0 1.0
CB A:CYS168 3.3 19.3 1.0
CB A:CYS174 3.4 16.3 1.0
CB A:HIS171 3.4 18.8 1.0
CB A:HIS153 3.6 15.6 1.0
CA A:HIS153 4.1 15.3 1.0
NE2 A:HIS153 4.1 18.5 1.0
NE2 A:HIS171 4.1 17.6 1.0
N A:HIS171 4.1 20.6 1.0
CD2 A:HIS171 4.2 18.2 1.0
CD2 A:HIS153 4.2 18.5 1.0
CA A:HIS171 4.4 19.7 1.0
O A:HIS153 4.6 16.2 1.0
CB A:TYR170 4.6 20.0 1.0
CA A:CYS168 4.7 19.5 1.0
CA A:CYS174 4.8 16.7 1.0
C A:HIS153 4.8 15.6 1.0
CB A:GLU176 4.9 16.9 1.0

Reference:

B.Nocek, A.J.Stein, R.Jedrzejczak, M.E.Cuff, H.Li, L.Volkart, A.Joachimiak. Structural Studies of Rok Fructokinase Ydhr From Bacillus Subtilis: Insights Into Substrate Binding and Fructose Specificity. J.Mol.Biol. V. 406 325 2011.
ISSN: ISSN 0022-2836
PubMed: 21185308
DOI: 10.1016/J.JMB.2010.12.021
Page generated: Wed Dec 16 04:40:24 2020

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