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Zinc in PDB 3ocq: Crystal Structure of Trna-Specific Adenosine Deaminase From Salmonella Enterica

Enzymatic activity of Crystal Structure of Trna-Specific Adenosine Deaminase From Salmonella Enterica

All present enzymatic activity of Crystal Structure of Trna-Specific Adenosine Deaminase From Salmonella Enterica:
3.5.4.4;

Protein crystallography data

The structure of Crystal Structure of Trna-Specific Adenosine Deaminase From Salmonella Enterica, PDB code: 3ocq was solved by J.Kim, U.A.Ramagopal, S.K.Burley, S.C.Almo, New York Sgx Research Centerfor Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.05
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 75.490, 75.490, 44.757, 90.00, 90.00, 120.00
R / Rfree (%) 18.6 / 23.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Trna-Specific Adenosine Deaminase From Salmonella Enterica (pdb code 3ocq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Trna-Specific Adenosine Deaminase From Salmonella Enterica, PDB code: 3ocq:

Zinc binding site 1 out of 1 in 3ocq

Go back to Zinc Binding Sites List in 3ocq
Zinc binding site 1 out of 1 in the Crystal Structure of Trna-Specific Adenosine Deaminase From Salmonella Enterica


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Trna-Specific Adenosine Deaminase From Salmonella Enterica within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn184

b:23.4
occ:1.00
ND1 A:HIS68 2.0 29.1 1.0
O A:HOH220 2.1 24.2 1.0
SG A:CYS101 2.2 24.7 1.0
SG A:CYS98 2.4 26.2 1.0
CE1 A:HIS68 2.9 30.7 1.0
CG A:HIS68 3.1 27.1 1.0
CB A:CYS101 3.3 25.7 1.0
CB A:CYS98 3.4 24.7 1.0
CB A:HIS68 3.5 24.0 1.0
N A:CYS98 3.9 22.8 1.0
OE2 A:GLU70 3.9 25.3 1.0
N A:CYS101 4.0 23.4 1.0
CE A:MET100 4.0 19.9 1.0
NE2 A:HIS68 4.1 24.5 1.0
OE1 A:GLU70 4.1 30.4 1.0
CD2 A:HIS68 4.2 24.7 1.0
CA A:CYS98 4.2 24.4 1.0
CA A:CYS101 4.2 22.3 1.0
CD A:GLU70 4.3 26.3 1.0
C A:CYS98 4.8 25.1 1.0
O A:CYS98 4.9 24.5 1.0
CB A:MET100 4.9 22.3 1.0

Reference:

J.Kim, U.A.Ramagopal, S.K.Burley, S.C.Almo. Crystal Structure of Trna-Specific Adenosine Deaminase From Salmonella Enterica To Be Published.
Page generated: Wed Dec 16 04:40:13 2020

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