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Zinc in PDB 3o97: Crystal Structure of the Complex of C-Lobe of Lactoferrin with Indole Acetic Acid at 2.68 A Resolution

Protein crystallography data

The structure of Crystal Structure of the Complex of C-Lobe of Lactoferrin with Indole Acetic Acid at 2.68 A Resolution, PDB code: 3o97 was solved by P.K.Shukla, M.Sinha, A.Bhushan, G.Vikram, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 63.24 / 2.68
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.234, 50.396, 65.893, 90.00, 107.70, 90.00
R / Rfree (%) 17.2 / 22.2

Other elements in 3o97:

The structure of Crystal Structure of the Complex of C-Lobe of Lactoferrin with Indole Acetic Acid at 2.68 A Resolution also contains other interesting chemical elements:

Iron (Fe) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Complex of C-Lobe of Lactoferrin with Indole Acetic Acid at 2.68 A Resolution (pdb code 3o97). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Complex of C-Lobe of Lactoferrin with Indole Acetic Acid at 2.68 A Resolution, PDB code: 3o97:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3o97

Go back to Zinc Binding Sites List in 3o97
Zinc binding site 1 out of 2 in the Crystal Structure of the Complex of C-Lobe of Lactoferrin with Indole Acetic Acid at 2.68 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Complex of C-Lobe of Lactoferrin with Indole Acetic Acid at 2.68 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:37.7
occ:1.00
OE2 A:GLU659 2.0 37.6 1.0
OE1 A:GLU659 2.5 37.9 1.0
CD A:GLU659 2.6 37.4 1.0
O A:GLY653 3.7 41.8 1.0
CG A:GLU659 4.0 34.0 1.0
O A:ARG654 4.4 40.4 1.0
CA A:PRO655 4.4 37.7 1.0
N A:THR656 4.7 36.0 1.0
CB A:GLU659 4.8 33.8 1.0
C A:ARG654 4.9 40.0 1.0
C A:GLY653 5.0 41.7 1.0

Zinc binding site 2 out of 2 in 3o97

Go back to Zinc Binding Sites List in 3o97
Zinc binding site 2 out of 2 in the Crystal Structure of the Complex of C-Lobe of Lactoferrin with Indole Acetic Acid at 2.68 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Complex of C-Lobe of Lactoferrin with Indole Acetic Acid at 2.68 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn303

b:43.7
occ:1.00
NE2 A:HIS588 2.1 32.9 1.0
CE1 A:HIS588 3.1 32.2 1.0
CD2 A:HIS588 3.1 32.4 1.0
O A:HOH792 3.5 48.1 1.0
ND1 A:HIS588 4.2 32.2 1.0
CG A:HIS588 4.2 32.2 1.0
O A:HOH751 4.3 53.0 1.0

Reference:

P.K.Shukla, M.Sinha, A.Bhushan, G.Vikram, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of the Complex of C-Lobe of Lactoferrin with Indole Acetic Acid at 2.68 A Resolution To Be Published.
Page generated: Wed Dec 16 04:40:05 2020

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