Zinc in PDB 3o47: Crystal Structure of ARFGAP1-ARF1 Fusion Protein

The structure of Crystal Structure of ARFGAP1-ARF1 Fusion Protein, PDB code: 3o47 was solved by H.Wang, Y.Tong, L.Nedyalkova, W.Tempel, X.Guan, L.Crombet, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, H.Park, Structuralgenomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.65 / 2.80
Space group	I 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	79.298, 129.161, 157.685, 90.00, 90.00, 90.00
R / Rfree (%)	20.6 / 24.3

The binding sites of Zinc atom in the Crystal Structure of ARFGAP1-ARF1 Fusion Protein (pdb code 3o47). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of ARFGAP1-ARF1 Fusion Protein, PDB code: 3o47:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of ARFGAP1-ARF1 Fusion Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of ARFGAP1-ARF1 Fusion Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:51.6 occ:1.00 SG A:CYS45 2.1 51.5 1.0 SG A:CYS25 2.2 47.1 1.0 SG A:CYS22 2.4 43.5 1.0 SG A:CYS42 2.4 50.0 1.0 CB A:CYS45 3.1 47.3 1.0 CB A:CYS25 3.2 43.6 1.0 CB A:CYS22 3.3 41.0 1.0 CB A:CYS42 3.3 45.6 1.0 OE2 A:GLU171 3.7 79.9 1.0 N A:CYS25 3.8 44.9 1.0 N A:CYS42 3.8 45.5 1.0 CA A:CYS25 4.1 43.8 1.0 CA A:CYS42 4.1 45.0 1.0 N A:CYS45 4.2 47.1 1.0 CA A:CYS45 4.2 47.0 1.0 CB A:ALA27 4.6 41.9 1.0 CA A:CYS22 4.7 42.6 1.0 CD A:GLU171 4.7 80.0 1.0 CB A:GLU24 4.7 41.7 1.0 C A:CYS42 4.8 47.4 1.0 C A:CYS25 4.8 46.9 1.0 O A:CYS42 4.8 47.2 1.0 C A:GLU24 4.9 48.5 1.0 OE1 A:GLU171 4.9 54.5 1.0 C A:ILE41 5.0 47.4 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of ARFGAP1-ARF1 Fusion Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of ARFGAP1-ARF1 Fusion Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn501 b:62.5 occ:1.00 SG B:CYS42 2.3 61.4 1.0 SG B:CYS25 2.3 64.6 1.0 SG B:CYS45 2.3 62.2 1.0 SG B:CYS22 2.4 60.8 1.0 CB B:CYS45 3.2 58.4 1.0 CB B:CYS22 3.3 57.1 1.0 CB B:CYS25 3.4 60.3 1.0 CB B:CYS42 3.5 56.8 1.0 N B:CYS42 3.9 56.5 1.0 N B:CYS25 3.9 58.9 1.0 CB B:ALA27 4.2 59.1 1.0 CA B:CYS42 4.2 55.8 1.0 CA B:CYS25 4.2 59.4 1.0 N B:CYS45 4.2 58.3 1.0 CA B:CYS45 4.3 58.4 1.0 O B:CYS42 4.5 57.8 1.0 C B:CYS42 4.7 57.6 1.0 CA B:CYS22 4.7 56.7 1.0 CB B:GLU24 4.8 55.4 1.0 N B:ALA27 4.9 59.3 1.0 C B:CYS25 4.9 64.0 1.0 C B:GLU24 5.0 60.9 1.0

H.Wang, Y.Tong, L.Nedyalkova, W.Tempel, X.Guan, L.Crombet, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, H.Park. Crystal Structure of ARFGAP1-ARF1 Fusion Protein To Be Published.