Zinc in PDB 3nnq: Crystal Structure of the N-Terminal Domain of Moloney Murine Leukemia Virus Integrase, Northeast Structural Genomics Consortium Target OR3

The structure of Crystal Structure of the N-Terminal Domain of Moloney Murine Leukemia Virus Integrase, Northeast Structural Genomics Consortium Target OR3, PDB code: 3nnq was solved by R.Guan, R.Xiao, T.Acton, M.Jiang, M.Roth, G.T.Montelione, Northeaststructural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.72 / 2.69
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	112.818, 112.818, 115.528, 90.00, 90.00, 120.00
R / Rfree (%)	22.9 / 27.4

The binding sites of Zinc atom in the Crystal Structure of the N-Terminal Domain of Moloney Murine Leukemia Virus Integrase, Northeast Structural Genomics Consortium Target OR3 (pdb code 3nnq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the N-Terminal Domain of Moloney Murine Leukemia Virus Integrase, Northeast Structural Genomics Consortium Target OR3, PDB code: 3nnq:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the N-Terminal Domain of Moloney Murine Leukemia Virus Integrase, Northeast Structural Genomics Consortium Target OR3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the N-Terminal Domain of Moloney Murine Leukemia Virus Integrase, Northeast Structural Genomics Consortium Target OR3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:92.1 occ:1.00 NE2 A:HIS58 2.1 0.3 1.0 ND1 A:HIS62 2.1 71.6 1.0 SG A:CYS95 2.3 78.5 1.0 SG A:CYS98 2.3 0.1 1.0 CE1 A:HIS58 2.9 81.6 1.0 CD2 A:HIS58 2.9 77.5 1.0 CG A:HIS62 3.0 60.9 1.0 CE1 A:HIS62 3.1 64.4 1.0 CB A:CYS95 3.3 62.9 1.0 CB A:CYS98 3.3 90.3 1.0 CB A:HIS62 3.3 40.3 1.0 CA A:HIS62 3.7 57.2 1.0 N A:CYS98 3.7 85.5 1.0 ND1 A:HIS58 3.9 77.8 1.0 CG A:HIS58 4.0 77.5 1.0 CA A:CYS98 4.0 93.6 1.0 NE2 A:HIS62 4.2 82.9 1.0 CD2 A:HIS62 4.2 85.0 1.0 O A:HIS62 4.3 67.7 1.0 C A:HIS62 4.3 75.1 1.0 CB A:ALA97 4.5 60.2 1.0 O A:HIS58 4.5 86.4 1.0 C A:ALA97 4.7 86.3 1.0 CA A:CYS95 4.7 85.2 1.0 N A:HIS62 4.9 62.1 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the N-Terminal Domain of Moloney Murine Leukemia Virus Integrase, Northeast Structural Genomics Consortium Target OR3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the N-Terminal Domain of Moloney Murine Leukemia Virus Integrase, Northeast Structural Genomics Consortium Target OR3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:88.2 occ:1.00 ND1 B:HIS62 2.1 69.8 1.0 NE2 B:HIS58 2.1 1.0 1.0 SG B:CYS98 2.3 94.5 1.0 SG B:CYS95 2.3 68.9 1.0 CE1 B:HIS58 2.9 80.8 1.0 CD2 B:HIS58 3.0 75.3 1.0 CG B:HIS62 3.0 56.5 1.0 CE1 B:HIS62 3.1 65.8 1.0 CB B:CYS98 3.3 77.8 1.0 CB B:HIS62 3.3 42.5 1.0 CB B:CYS95 3.3 65.5 1.0 N B:CYS98 3.7 87.9 1.0 CA B:HIS62 3.7 69.9 1.0 CA B:CYS98 3.9 89.3 1.0 ND1 B:HIS58 3.9 76.9 1.0 CG B:HIS58 4.0 66.6 1.0 NE2 B:HIS62 4.2 76.3 1.0 CD2 B:HIS62 4.2 82.7 1.0 O B:HIS62 4.2 80.5 1.0 C B:HIS62 4.3 84.1 1.0 CB B:ALA97 4.5 66.3 1.0 O B:HIS58 4.5 89.4 1.0 C B:ALA97 4.6 86.4 1.0 CA B:CYS95 4.7 79.9 1.0 N B:HIS62 4.9 56.3 1.0

R.Guan, S.Aiyer, M.L.Cote, R.Xiao, M.Jiang, T.B.Acton, M.J.Roth, G.T.Montelione. X-Ray Crystal Structure of the N-Terminal Region of Moloney Murine Leukemia Virus Integrase and Its Implications For Viral Dna Recognition. Proteins 2017.
ISSN: ESSN 1097-0134
PubMed: 28066922
DOI: 10.1002/PROT.25245