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Zinc in PDB 3mjn: Crystal Structure of the Complex of C-Lobe of Lactoferrin with Isopropylamino-3-(1-Naphthyloxy)Propan-2-Ol at 2.38 A Resolution

Protein crystallography data

The structure of Crystal Structure of the Complex of C-Lobe of Lactoferrin with Isopropylamino-3-(1-Naphthyloxy)Propan-2-Ol at 2.38 A Resolution, PDB code: 3mjn was solved by K.Srivastava, G.Vikram, S.Kaushik, M.Sinha, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 62.50 / 2.38
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.107, 50.248, 65.654, 90.00, 107.82, 90.00
R / Rfree (%) 17.1 / 21.1

Other elements in 3mjn:

The structure of Crystal Structure of the Complex of C-Lobe of Lactoferrin with Isopropylamino-3-(1-Naphthyloxy)Propan-2-Ol at 2.38 A Resolution also contains other interesting chemical elements:

Iron (Fe) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Complex of C-Lobe of Lactoferrin with Isopropylamino-3-(1-Naphthyloxy)Propan-2-Ol at 2.38 A Resolution (pdb code 3mjn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Complex of C-Lobe of Lactoferrin with Isopropylamino-3-(1-Naphthyloxy)Propan-2-Ol at 2.38 A Resolution, PDB code: 3mjn:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3mjn

Go back to Zinc Binding Sites List in 3mjn
Zinc binding site 1 out of 2 in the Crystal Structure of the Complex of C-Lobe of Lactoferrin with Isopropylamino-3-(1-Naphthyloxy)Propan-2-Ol at 2.38 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Complex of C-Lobe of Lactoferrin with Isopropylamino-3-(1-Naphthyloxy)Propan-2-Ol at 2.38 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1003

b:34.6
occ:1.00
OE2 A:GLU659 2.1 29.0 1.0
OE1 A:GLU659 2.5 26.7 1.0
CD A:GLU659 2.6 27.4 1.0
O A:GLY653 3.6 35.2 1.0
CG A:GLU659 4.1 25.4 1.0
O A:ARG654 4.3 32.1 1.0
O A:HOH285 4.4 59.8 1.0
CA A:PRO655 4.5 29.1 1.0
N A:THR656 4.8 27.3 1.0
C A:GLY653 4.8 35.1 1.0
C A:ARG654 4.8 32.2 1.0
CB A:GLU659 4.9 25.0 1.0

Zinc binding site 2 out of 2 in 3mjn

Go back to Zinc Binding Sites List in 3mjn
Zinc binding site 2 out of 2 in the Crystal Structure of the Complex of C-Lobe of Lactoferrin with Isopropylamino-3-(1-Naphthyloxy)Propan-2-Ol at 2.38 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Complex of C-Lobe of Lactoferrin with Isopropylamino-3-(1-Naphthyloxy)Propan-2-Ol at 2.38 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1004

b:39.4
occ:1.00
O A:HOH50 2.1 48.4 1.0
NE2 A:HIS588 2.2 26.0 1.0
CE1 A:HIS588 3.0 23.5 1.0
CD2 A:HIS588 3.2 25.0 1.0
O A:HOH287 3.9 57.4 1.0
O A:HOH162 4.0 49.8 1.0
ND1 A:HIS588 4.2 24.8 1.0
CG A:HIS588 4.3 24.7 1.0
CG2 A:VAL591 4.3 25.2 1.0
O A:HOH78 4.8 37.5 1.0

Reference:

K.Srivastava, G.Vikram, S.Kaushik, M.Sinha, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of the Complex of C-Lobe of Lactoferrin with Isopropylamino-3-(1-Naphthyloxy)Propan-2-Ol at 2.38 A Resolution To Be Published.
Page generated: Wed Dec 16 04:35:24 2020

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