Zinc in PDB 3mfq: A Glance Into the Metal Binding Specificity of Troa: Where Elaborate Behaviors Occur in the Active Center

The structure of A Glance Into the Metal Binding Specificity of Troa: Where Elaborate Behaviors Occur in the Active Center, PDB code: 3mfq was solved by G.F.Gao, B.Zheng, Q.Zhang, J.Gao, H.Han, M.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.44 / 2.60
Space group	P 43
Cell size a, b, c (Å), α, β, γ (°)	102.360, 102.360, 107.333, 90.00, 90.00, 90.00
R / Rfree (%)	22.6 / 25.6

The binding sites of Zinc atom in the A Glance Into the Metal Binding Specificity of Troa: Where Elaborate Behaviors Occur in the Active Center (pdb code 3mfq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the A Glance Into the Metal Binding Specificity of Troa: Where Elaborate Behaviors Occur in the Active Center, PDB code: 3mfq:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the A Glance Into the Metal Binding Specificity of Troa: Where Elaborate Behaviors Occur in the Active Center


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of A Glance Into the Metal Binding Specificity of Troa: Where Elaborate Behaviors Occur in the Active Center within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:48.3 occ:1.00 NE2 A:HIS131 2.2 43.7 1.0 NE2 A:HIS197 2.2 47.9 1.0 OD2 A:ASP281 2.4 56.6 1.0 OD1 A:ASP281 2.4 50.2 1.0 NE2 A:HIS68 2.5 51.3 1.0 CG A:ASP281 2.7 54.1 1.0 CD2 A:HIS68 3.1 48.8 1.0 CE1 A:HIS131 3.1 46.6 1.0 CE1 A:HIS197 3.1 47.9 1.0 CD2 A:HIS197 3.2 51.9 1.0 CD2 A:HIS131 3.2 44.8 1.0 CE1 A:HIS68 3.6 51.0 1.0 O A:VAL217 3.9 40.7 1.0 CG2 A:THR219 4.0 65.1 1.0 CB A:ALA199 4.0 46.0 1.0 CB A:ASP281 4.2 49.1 1.0 ND1 A:HIS131 4.2 44.0 1.0 ND1 A:HIS197 4.2 54.1 1.0 CG A:HIS197 4.3 52.0 1.0 CG A:HIS131 4.3 43.4 1.0 CG A:HIS68 4.4 50.8 1.0 O A:HOH4 4.4 47.4 1.0 OG A:SER280 4.5 46.5 1.0 ND1 A:HIS68 4.6 49.6 1.0 CE1 A:PHE93 4.8 54.6 1.0 CA A:ALA199 5.0 47.5 1.0

Zinc binding site 2 out of 3 in the A Glance Into the Metal Binding Specificity of Troa: Where Elaborate Behaviors Occur in the Active Center


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of A Glance Into the Metal Binding Specificity of Troa: Where Elaborate Behaviors Occur in the Active Center within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:41.6 occ:1.00 OD1 B:ASP281 2.2 29.6 1.0 NE2 B:HIS131 2.2 36.1 1.0 NE2 B:HIS197 2.2 33.8 1.0 NE2 B:HIS68 2.4 35.9 1.0 OD2 B:ASP281 2.5 36.8 1.0 CG B:ASP281 2.7 33.4 1.0 CE1 B:HIS197 3.0 35.1 1.0 CD2 B:HIS131 3.1 35.0 1.0 CD2 B:HIS68 3.1 33.9 1.0 CE1 B:HIS131 3.2 36.2 1.0 CD2 B:HIS197 3.3 37.9 1.0 CE1 B:HIS68 3.5 38.0 1.0 O B:VAL217 3.7 46.2 1.0 CB B:ALA199 4.1 41.8 1.0 CB B:ASP281 4.1 28.5 1.0 ND1 B:HIS197 4.2 36.7 1.0 CG B:HIS131 4.3 34.7 1.0 ND1 B:HIS131 4.3 32.5 1.0 CG B:HIS68 4.4 35.7 1.0 CE1 B:PHE93 4.4 30.4 1.0 CG B:HIS197 4.4 34.6 1.0 ND1 B:HIS68 4.5 36.3 1.0 O B:HOH348 4.5 29.9 1.0 CG2 B:THR219 4.5 29.2 1.0 OG B:SER280 4.7 32.9 1.0 CA B:ASP281 4.9 27.2 1.0 C B:VAL217 5.0 46.9 1.0 O B:ASP198 5.0 49.9 1.0 CB B:SER280 5.0 30.1 1.0

Zinc binding site 3 out of 3 in the A Glance Into the Metal Binding Specificity of Troa: Where Elaborate Behaviors Occur in the Active Center


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of A Glance Into the Metal Binding Specificity of Troa: Where Elaborate Behaviors Occur in the Active Center within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn401 b:66.3 occ:1.00 NE2 C:HIS197 2.3 57.3 1.0 NE2 C:HIS131 2.3 71.7 1.0 NE2 C:HIS68 2.5 59.5 1.0 OD1 C:ASP281 2.5 66.5 1.0 CD2 C:HIS68 2.8 57.1 1.0 OD2 C:ASP281 2.9 69.5 1.0 CG C:ASP281 3.0 64.5 1.0 CE1 C:HIS131 3.1 72.9 1.0 CD2 C:HIS197 3.2 58.3 1.0 CE1 C:HIS197 3.2 57.9 1.0 CD2 C:HIS131 3.4 69.5 1.0 O C:VAL217 3.5 50.0 1.0 CE1 C:HIS68 3.7 61.0 1.0 CG C:HIS68 4.1 60.0 1.0 CG2 C:THR219 4.1 59.7 1.0 ND1 C:HIS131 4.3 73.3 1.0 ND1 C:HIS197 4.3 58.3 1.0 CG C:HIS197 4.4 56.7 1.0 CB C:ASP281 4.4 59.2 1.0 CB C:ALA199 4.4 55.5 1.0 ND1 C:HIS68 4.5 61.6 1.0 CE1 C:PHE93 4.5 58.2 1.0 CG C:HIS131 4.5 71.6 1.0 C C:VAL217 4.7 54.4 1.0 O C:ASP198 4.8 89.4 1.0

B.Zheng, Q.Zhang, J.Gao, H.Han, M.Li, J.Zhang, J.Qi, J.Yan, G.F.Gao. Insight Into the Interaction of Metal Ions with Troa From Streptococcus Suis Plos One V. 6 19510 2011.
ISSN: ESSN 1932-6203
PubMed: 21611125
DOI: 10.1371/JOURNAL.PONE.0019510