Zinc in PDB 3mcx: Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution

The structure of Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution, PDB code: 3mcx was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.90 / 1.49
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	107.161, 147.472, 73.434, 90.00, 90.00, 90.00
R / Rfree (%)	14.2 / 16.1

The binding sites of Zinc atom in the Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution (pdb code 3mcx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution, PDB code: 3mcx:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1 b:12.1 occ:0.80 OE1 A:GLU197 1.9 8.1 1.0 O A:HOH1235 2.0 8.1 1.0 CD A:GLU197 2.8 8.6 1.0 OE2 A:GLU197 3.1 9.8 1.0 CH3 A:ACT7 3.6 29.2 0.8 O A:HOH866 4.0 9.0 1.0 O A:HOH1033 4.1 20.2 1.0 O A:HOH1024 4.2 14.3 1.0 CG A:GLN194 4.2 4.8 1.0 CG A:GLU197 4.2 7.9 1.0 CB A:GLU197 4.6 6.3 1.0 CA A:GLN194 4.8 5.2 1.0 CB A:GLN194 4.9 4.8 1.0 C A:ACT7 4.9 29.6 0.8 NE2 A:GLN194 4.9 5.1 1.0

Zinc binding site 2 out of 6 in the Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn2 b:24.2 occ:0.60 OE2 A:GLU395 1.9 16.4 1.0 CD A:GLU395 2.8 15.4 1.0 OE1 A:GLU395 3.0 18.0 1.0 O A:HOH607 3.8 31.8 1.0 CG A:GLU395 4.1 12.0 1.0 O A:HOH1192 4.8 26.3 1.0

Zinc binding site 3 out of 6 in the Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn3 b:10.1 occ:0.80 OE2 A:GLU335 2.0 3.9 1.0 ND1 A:HIS350 2.0 3.4 1.0 OE1 A:GLU339 2.0 5.2 1.0 CD A:GLU339 2.8 5.3 1.0 CE1 A:HIS350 2.9 6.8 1.0 CD A:GLU335 2.9 8.0 1.0 OE2 A:GLU339 2.9 6.2 1.0 CG A:HIS350 3.1 3.5 1.0 OE1 A:GLU335 3.2 9.8 1.0 O A:HOH842 3.5 5.7 1.0 CB A:HIS350 3.5 4.6 1.0 NE2 A:HIS350 4.0 5.9 1.0 CD2 A:HIS350 4.1 5.7 1.0 CA A:HIS350 4.2 4.5 1.0 CG A:GLU335 4.2 11.4 1.0 CG A:GLU339 4.3 5.6 1.0 O A:HOH813 4.7 6.4 1.0 CB A:GLU339 4.8 5.7 1.0 O A:HIS350 5.0 7.6 1.0

Zinc binding site 4 out of 6 in the Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn4 b:29.0 occ:0.50 OD1 A:ASP403 2.0 11.0 1.0 CG A:ASP403 2.9 9.6 1.0 OD2 A:ASP403 3.2 10.1 1.0 O A:HOH1142 3.8 16.9 1.0 O A:HOH1183 4.2 7.8 0.5 NH1 A:ARG407 4.2 8.0 1.0 CB A:ASP403 4.3 8.0 1.0 NH2 A:ARG407 4.4 10.0 1.0 CZ A:ARG407 4.8 9.6 1.0 CA A:ASP403 4.9 7.6 1.0

Zinc binding site 5 out of 6 in the Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn5 b:22.4 occ:0.60 O A:HOH715 2.0 22.1 1.0 OD1 A:ASP411 2.1 6.5 1.0 O A:HOH1236 2.1 22.1 1.0 O A:HOH1206 2.2 17.6 1.0 O A:HOH1055 2.3 15.6 1.0 OG A:SER413 2.3 9.6 1.0 CG A:ASP411 3.0 4.8 1.0 CB A:SER413 3.1 7.2 1.0 OD2 A:ASP411 3.3 8.2 1.0 N A:SER413 3.9 6.8 1.0 CA A:SER413 4.1 7.4 1.0 O A:HOH682 4.3 21.6 1.0 O A:HOH1044 4.3 12.4 1.0 O A:HOH1170 4.3 25.1 1.0 CB A:ASP411 4.4 5.1 1.0 O A:HOH681 4.4 17.8 1.0 O A:HOH1105 4.5 23.8 1.0 CA A:ASP411 4.7 5.2 1.0 N A:THR412 4.8 5.0 1.0 C A:ASP411 4.8 4.4 1.0 C A:SER413 4.9 7.3 1.0

Zinc binding site 6 out of 6 in the Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Susd Superfamily Protein (BT_2365) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.49 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn6 b:22.9 occ:0.50 ND1 A:HIS185 2.0 24.6 0.5 CB A:HIS185 2.2 31.3 0.5 CG A:HIS185 2.4 31.8 0.5 O A:HOH1233 2.7 33.1 1.0 CE1 A:HIS185 2.9 25.1 0.5 ND1 A:HIS185 2.9 31.4 0.5 CG A:HIS185 3.0 26.4 0.5 CD2 A:HIS185 3.2 31.8 0.5 CB A:HIS185 3.4 29.5 0.5 CA A:HIS185 3.4 31.4 0.5 CA A:HIS185 3.7 30.0 0.5 CE1 A:HIS185 3.8 31.7 0.5 NE2 A:HIS185 4.0 24.1 0.5 NE2 A:HIS185 4.0 32.4 0.5 CD2 A:HIS185 4.0 25.4 0.5 C A:HIS185 4.1 30.3 0.5 N A:HIS185 4.6 32.2 0.5 O A:HIS185 4.6 30.9 0.5 OD2 A:ASP182 4.6 31.1 1.0 C A:HIS185 4.6 29.5 0.5 N A:LYS186 4.7 29.2 1.0 N A:HIS185 4.7 31.4 0.5

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.