Atomistry » Zinc » PDB 3lt8-3m1j » 3m1d
Atomistry »
  Zinc »
    PDB 3lt8-3m1j »
      3m1d »

Zinc in PDB 3m1d: Structure of BIR1 From CIAP1

Protein crystallography data

The structure of Structure of BIR1 From CIAP1, PDB code: 3m1d was solved by P.D.Mace, C.L.Day, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.40 / 2.00
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 59.180, 59.180, 199.620, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 23.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of BIR1 From CIAP1 (pdb code 3m1d). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of BIR1 From CIAP1, PDB code: 3m1d:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3m1d

Go back to Zinc Binding Sites List in 3m1d
Zinc binding site 1 out of 2 in the Structure of BIR1 From CIAP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of BIR1 From CIAP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1000

b:23.9
occ:1.00
NE2 A:HIS103 2.2 18.6 1.0
SG A:CYS86 2.3 21.4 1.0
SG A:CYS110 2.3 22.4 1.0
SG A:CYS83 2.4 22.8 1.0
CE1 A:HIS103 2.8 21.0 1.0
CB A:CYS110 3.1 21.9 1.0
CB A:CYS83 3.1 22.2 1.0
CB A:CYS86 3.3 19.2 1.0
CD2 A:HIS103 3.5 26.7 1.0
N A:CYS86 3.5 21.5 1.0
CA A:CYS86 4.0 21.5 1.0
ND1 A:HIS103 4.1 26.5 1.0
CB A:CYS85 4.2 24.4 1.0
CG A:HIS103 4.4 25.6 1.0
CA A:CYS110 4.5 29.4 1.0
C A:CYS85 4.5 26.6 1.0
CA A:CYS83 4.6 22.1 1.0
CA A:CYS85 4.7 25.9 1.0
N A:CYS85 4.8 23.3 1.0
C A:CYS86 4.8 20.5 1.0
N A:GLY87 4.9 21.1 1.0
SG A:CYS85 4.9 24.4 1.0
CB A:LEU88 5.0 21.8 1.0

Zinc binding site 2 out of 2 in 3m1d

Go back to Zinc Binding Sites List in 3m1d
Zinc binding site 2 out of 2 in the Structure of BIR1 From CIAP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of BIR1 From CIAP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1000

b:28.3
occ:1.00
NE2 B:HIS103 2.1 27.6 1.0
SG B:CYS83 2.3 23.9 1.0
SG B:CYS110 2.4 24.3 1.0
SG B:CYS86 2.4 23.4 1.0
CE1 B:HIS103 2.5 32.5 1.0
CB B:CYS83 3.1 24.0 1.0
CB B:CYS110 3.2 25.2 1.0
CB B:CYS86 3.4 21.2 1.0
CD2 B:HIS103 3.5 34.7 1.0
N B:CYS86 3.6 20.8 1.0
ND1 B:HIS103 3.8 34.7 1.0
CA B:CYS86 4.1 22.8 1.0
CB B:CYS85 4.2 27.0 1.0
CG B:HIS103 4.3 36.6 1.0
CA B:CYS110 4.6 29.6 1.0
C B:CYS85 4.6 22.6 1.0
CA B:CYS83 4.6 26.3 1.0
CA B:CYS85 4.8 25.1 1.0
C B:CYS86 4.8 22.7 1.0
N B:CYS85 4.8 26.7 1.0
SG B:CYS85 4.9 28.7 1.0
N B:GLY87 4.9 23.2 1.0
CB B:ILE113 4.9 31.7 1.0
CB B:LEU88 4.9 23.9 1.0

Reference:

P.D.Mace, C.Smits, D.L.Vaux, J.Silke, C.L.Day. Asymmetric Recruitment of Ciaps By TRAF2 J.Mol.Biol. V. 400 8 2010.
ISSN: ISSN 0022-2836
PubMed: 20447407
DOI: 10.1016/J.JMB.2010.04.055
Page generated: Wed Dec 16 04:33:37 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy