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Zinc in PDB 3lwv: Structure of H/Aca Rnp Bound to A Substrate Rna Containing 2'- Deoxyuridine

Protein crystallography data

The structure of Structure of H/Aca Rnp Bound to A Substrate Rna Containing 2'- Deoxyuridine, PDB code: 3lwv was solved by J.Zhou, B.Liang, C.Lv, W.Yang, H.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.64 / 2.50
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 186.838, 64.326, 83.362, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 24.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of H/Aca Rnp Bound to A Substrate Rna Containing 2'- Deoxyuridine (pdb code 3lwv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of H/Aca Rnp Bound to A Substrate Rna Containing 2'- Deoxyuridine, PDB code: 3lwv:

Zinc binding site 1 out of 1 in 3lwv

Go back to Zinc Binding Sites List in 3lwv
Zinc binding site 1 out of 1 in the Structure of H/Aca Rnp Bound to A Substrate Rna Containing 2'- Deoxyuridine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of H/Aca Rnp Bound to A Substrate Rna Containing 2'- Deoxyuridine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn61

b:0.7
occ:1.01
CG1 B:VAL22 2.8 72.3 1.0
CB B:CYS23 2.9 63.1 1.0
N B:CYS23 3.2 71.5 1.0
CB B:CYS11 3.2 48.3 1.0
CA B:CYS23 3.3 78.6 1.0
CB B:VAL22 3.3 72.0 1.0
C B:VAL22 3.4 76.2 1.0
SG B:CYS11 3.5 57.3 1.0
SG B:CYS23 3.6 57.0 1.0
O B:VAL22 3.8 75.9 1.0
CA B:VAL22 4.1 74.8 1.0
CA B:CYS11 4.4 53.2 1.0
SG B:CYS20 4.5 67.8 1.0
CG2 B:VAL22 4.6 80.0 1.0
C B:CYS23 4.8 81.1 1.0
N B:CYS11 5.0 65.8 1.0

Reference:

J.Zhou, B.Liang, H.Li. Functional and Structural Impact of Target Uridine Substitutions on the H/Aca Ribonucleoprotein Particle Pseudouridine Synthase . Biochemistry V. 49 6276 2010.
ISSN: ISSN 0006-2960
PubMed: 20575532
DOI: 10.1021/BI1006699
Page generated: Wed Dec 16 04:33:26 2020

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