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Zinc in PDB 3luo: Crystal Structure and Functional Characterization of the Thermophilic Prolyl Isomerase and Chaperone Slyd

Enzymatic activity of Crystal Structure and Functional Characterization of the Thermophilic Prolyl Isomerase and Chaperone Slyd

All present enzymatic activity of Crystal Structure and Functional Characterization of the Thermophilic Prolyl Isomerase and Chaperone Slyd:
5.2.1.8;

Protein crystallography data

The structure of Crystal Structure and Functional Characterization of the Thermophilic Prolyl Isomerase and Chaperone Slyd, PDB code: 3luo was solved by C.Loew, P.Neumann, U.Weininger, M.T.Stubbs, J.Balbach, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.69 / 2.55
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 111.400, 111.400, 111.400, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 23.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure and Functional Characterization of the Thermophilic Prolyl Isomerase and Chaperone Slyd (pdb code 3luo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure and Functional Characterization of the Thermophilic Prolyl Isomerase and Chaperone Slyd, PDB code: 3luo:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 3luo

Go back to Zinc Binding Sites List in 3luo
Zinc binding site 1 out of 4 in the Crystal Structure and Functional Characterization of the Thermophilic Prolyl Isomerase and Chaperone Slyd


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure and Functional Characterization of the Thermophilic Prolyl Isomerase and Chaperone Slyd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn159

b:0.3
occ:0.81
 OE1 A:GLU137 2.8 71.3 1.0
O A:HOH177 3.1 80.4 1.0
CD A:GLU137 3.7 75.8 1.0
OE2 A:GLU137 4.0 83.5 1.0

Zinc binding site 2 out of 4 in 3luo

Go back to Zinc Binding Sites List in 3luo
Zinc binding site 2 out of 4 in the Crystal Structure and Functional Characterization of the Thermophilic Prolyl Isomerase and Chaperone Slyd


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure and Functional Characterization of the Thermophilic Prolyl Isomerase and Chaperone Slyd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn160

b:81.9
occ:0.66
 NE2 A:HIS149 2.1 78.4 1.0
O A:HOH163 2.2 50.0 1.0
ND1 A:HIS145 2.3 0.2 1.0
NE2 A:HIS147 2.4 85.6 1.0
CG A:HIS145 2.6 90.3 1.0
CE1 A:HIS145 2.9 93.0 1.0
CE1 A:HIS149 2.9 77.5 1.0
CB A:HIS145 3.1 47.5 1.0
CE1 A:HIS147 3.1 99.7 1.0
CD2 A:HIS149 3.2 75.0 1.0
CD2 A:HIS145 3.3 0.7 1.0
CD2 A:HIS147 3.5 89.7 1.0
NE2 A:HIS145 3.5 87.3 1.0
ND1 A:HIS149 4.1 80.5 1.0
ND1 A:HIS147 4.2 96.5 1.0
CG A:HIS149 4.3 77.9 1.0
CG A:HIS147 4.4 76.8 1.0
CA A:HIS145 4.6 62.5 1.0

Zinc binding site 3 out of 4 in 3luo

Go back to Zinc Binding Sites List in 3luo
Zinc binding site 3 out of 4 in the Crystal Structure and Functional Characterization of the Thermophilic Prolyl Isomerase and Chaperone Slyd


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure and Functional Characterization of the Thermophilic Prolyl Isomerase and Chaperone Slyd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn161

b:50.9
occ:0.43
 OD1 A:ASN35 2.7 84.9 1.0
N A:LEU30 3.1 58.7 1.0
N A:ALA148 3.4 60.4 1.0
CA A:TYR29 3.5 54.9 1.0
CG A:ASN35 3.5 79.3 1.0
CB A:HIS147 3.6 48.8 1.0
CB A:ASN35 3.7 58.2 1.0
CA A:HIS147 3.7 53.8 1.0
C A:TYR29 3.8 57.9 1.0
CB A:TYR29 3.9 45.1 1.0
CB A:LEU30 4.0 43.6 1.0
C A:HIS147 4.0 66.3 1.0
CA A:LEU30 4.1 57.7 1.0
CB A:ALA148 4.2 50.7 1.0
CA A:ALA148 4.4 64.4 1.0
O A:SER28 4.4 53.9 1.0
O A:LEU30 4.6 58.8 1.0
ND2 A:ASN35 4.7 62.5 1.0
N A:TYR29 4.7 46.6 1.0
O A:GLY146 4.8 63.6 1.0
C A:LEU30 4.9 56.1 1.0
CG A:HIS147 4.9 76.8 1.0
O A:TYR29 5.0 50.2 1.0
N A:HIS147 5.0 54.2 1.0

Zinc binding site 4 out of 4 in 3luo

Go back to Zinc Binding Sites List in 3luo
Zinc binding site 4 out of 4 in the Crystal Structure and Functional Characterization of the Thermophilic Prolyl Isomerase and Chaperone Slyd


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure and Functional Characterization of the Thermophilic Prolyl Isomerase and Chaperone Slyd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn162

b:0.8
occ:0.78
 OE1 A:GLU49 2.2 77.5 1.0
OE2 A:GLU49 2.6 88.8 1.0
CD A:GLU49 2.6 69.6 1.0
CG A:GLU49 4.0 56.9 1.0
O A:VAL135 4.3 55.1 1.0
CB A:GLU49 4.6 48.6 1.0
N A:VAL135 4.7 45.9 1.0
N A:MET1 4.8 75.3 1.0
CG A:LYS134 4.9 69.3 1.0

Reference:

C.Loew, P.Neumann, H.Tidow, U.Weininger, C.Haupt, B.Friedrich-Epler, C.Scholz, M.T.Stubbs, J.Balbach. Crystal Structure Determination and Functional Characterization of the Metallochaperone Slyd From Thermus Thermophilus J.Mol.Biol. V. 398 375 2010.
ISSN: ISSN 0022-2836
PubMed: 20230833
DOI: 10.1016/J.JMB.2010.03.014
Page generated: Wed Dec 16 04:33:15 2020

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