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Zinc in PDB 3lun: Structure of Ulilysin Mutant M290C

Protein crystallography data

The structure of Structure of Ulilysin Mutant M290C, PDB code: 3lun was solved by C.Tallant, R.Garcia-Castellanos, U.Baumann, F.X.Gomis-Ruth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.93 / 1.80
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 58.510, 116.290, 164.760, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 20.8

Other elements in 3lun:

The structure of Structure of Ulilysin Mutant M290C also contains other interesting chemical elements:

Calcium (Ca) 6 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Ulilysin Mutant M290C (pdb code 3lun). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Ulilysin Mutant M290C, PDB code: 3lun:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3lun

Go back to Zinc Binding Sites List in 3lun
Zinc binding site 1 out of 2 in the Structure of Ulilysin Mutant M290C


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Ulilysin Mutant M290C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn999

b:15.5
occ:1.00
NE2 A:HIS238 1.9 15.4 1.0
NE2 A:HIS232 2.0 14.8 1.0
NE2 A:HIS228 2.0 13.0 1.0
O A:HOH573 2.0 16.7 1.0
CD2 A:HIS238 2.8 14.8 1.0
CD2 A:HIS232 2.8 13.2 1.0
CD2 A:HIS228 2.9 12.9 1.0
CE1 A:HIS238 2.9 15.2 1.0
CE1 A:HIS228 3.0 13.6 1.0
CE1 A:HIS232 3.0 15.9 1.0
CE1 A:TYR292 3.7 21.9 1.0
OE2 A:GLU229 3.8 18.6 1.0
CG A:HIS238 3.9 15.0 1.0
ND1 A:HIS238 4.0 14.6 1.0
CG A:HIS232 4.0 12.4 1.0
CG A:HIS228 4.0 10.8 1.0
ND1 A:HIS228 4.0 11.8 1.0
ND1 A:HIS232 4.1 14.7 1.0
OH A:TYR292 4.1 27.4 1.0
OE1 A:GLU229 4.2 17.3 1.0
O A:HOH374 4.3 31.0 1.0
O A:HOH339 4.3 17.5 1.0
CZ A:TYR292 4.3 21.9 1.0
CD A:GLU229 4.3 14.8 1.0
O A:HOH445 4.4 25.2 1.0
CD1 A:TYR292 4.7 18.1 1.0

Zinc binding site 2 out of 2 in 3lun

Go back to Zinc Binding Sites List in 3lun
Zinc binding site 2 out of 2 in the Structure of Ulilysin Mutant M290C


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Ulilysin Mutant M290C within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn999

b:14.4
occ:1.00
NE2 B:HIS228 1.9 13.1 1.0
NE2 B:HIS238 1.9 14.9 1.0
NE2 B:HIS232 1.9 16.7 1.0
O B:HOH568 2.0 20.0 1.0
CD2 B:HIS228 2.8 14.2 1.0
CD2 B:HIS238 2.9 11.6 1.0
CD2 B:HIS232 2.9 12.3 1.0
CE1 B:HIS238 2.9 14.1 1.0
CE1 B:HIS228 2.9 14.1 1.0
CE1 B:HIS232 3.0 13.6 1.0
CE1 B:TYR292 3.8 17.2 1.0
ND1 B:HIS238 3.9 13.3 1.0
CG B:HIS228 4.0 12.1 1.0
CG B:HIS238 4.0 14.8 1.0
OE2 B:GLU229 4.0 18.9 1.0
ND1 B:HIS228 4.0 13.4 1.0
ND1 B:HIS232 4.0 14.0 1.0
CG B:HIS232 4.0 13.5 1.0
O B:HOH484 4.2 25.8 1.0
OH B:TYR292 4.2 20.8 1.0
OE1 B:GLU229 4.3 15.1 1.0
O B:HOH363 4.4 19.8 1.0
CD B:GLU229 4.5 15.2 1.0
CZ B:TYR292 4.5 17.4 1.0
O B:HOH368 4.6 29.6 1.0
CA B:ARG501 4.8 40.6 1.0
CD1 B:TYR292 4.8 13.9 1.0
CG B:ARG501 4.9 39.3 1.0
CB B:ARG501 5.0 40.6 1.0

Reference:

C.Tallant, R.Garcia-Castellanos, U.Baumann, F.X.Gomis-Ruth. On the Relevance of the Met-Turn Methionine in Metzincins. J.Biol.Chem. V. 285 13951 2010.
ISSN: ISSN 0021-9258
PubMed: 20202937
DOI: 10.1074/JBC.M109.083378
Page generated: Wed Dec 16 04:33:12 2020

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