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Zinc in PDB 3lu0: Molecular Model of Escherichia Coli Core Rna Polymerase

Enzymatic activity of Molecular Model of Escherichia Coli Core Rna Polymerase

All present enzymatic activity of Molecular Model of Escherichia Coli Core Rna Polymerase:
2.7.7.6;

Other elements in 3lu0:

The structure of Molecular Model of Escherichia Coli Core Rna Polymerase also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Molecular Model of Escherichia Coli Core Rna Polymerase (pdb code 3lu0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Molecular Model of Escherichia Coli Core Rna Polymerase, PDB code: 3lu0:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3lu0

Go back to Zinc Binding Sites List in 3lu0
Zinc binding site 1 out of 2 in the Molecular Model of Escherichia Coli Core Rna Polymerase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Molecular Model of Escherichia Coli Core Rna Polymerase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1409

b:81.6
occ:1.00
CB D:CYS88 2.1 0.0 1.0
SG D:CYS88 2.8 0.0 1.0
CA D:CYS88 3.4 0.0 1.0
O D:CYS88 3.4 0.0 1.0
SG D:CYS70 3.4 0.0 1.0
CB D:CYS72 3.5 0.0 1.0
C D:CYS88 3.8 0.0 1.0
N D:CYS88 3.8 0.0 1.0
N D:CYS72 4.4 0.0 1.0
CA D:CYS72 4.6 0.0 1.0
CB D:CYS85 4.6 0.0 1.0
SG D:CYS72 4.7 0.0 1.0
CD D:LYS74 4.7 0.0 1.0
SG D:CYS85 4.8 0.0 1.0
C D:LYS87 4.8 0.0 1.0

Zinc binding site 2 out of 2 in 3lu0

Go back to Zinc Binding Sites List in 3lu0
Zinc binding site 2 out of 2 in the Molecular Model of Escherichia Coli Core Rna Polymerase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Molecular Model of Escherichia Coli Core Rna Polymerase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1410

b:59.8
occ:1.00
SG D:CYS895 1.9 0.0 1.0
SG D:CYS898 2.3 0.0 1.0
SG D:CYS888 2.9 0.0 1.0
NH2 D:ARG883 3.1 0.0 1.0
CB D:CYS898 3.2 0.0 1.0
CB D:CYS895 3.5 0.0 1.0
CB D:CYS888 3.7 0.0 1.0
CG2 D:THR816 3.9 0.0 1.0
CZ D:ARG883 4.1 0.0 1.0
N D:CYS898 4.2 0.0 1.0
CA D:CYS888 4.3 0.0 1.0
CA D:CYS898 4.3 0.0 1.0
NE D:ARG883 4.4 0.0 1.0
CA D:CYS895 4.6 0.0 1.0
N D:CYS895 4.6 0.0 1.0
O D:SER884 4.8 0.0 1.0
O D:SER887 4.8 0.0 1.0
N D:ASP889 5.0 0.0 1.0

Reference:

N.Opalka, J.Brown, W.J.Lane, K.A.Twist, R.Landick, F.J.Asturias, S.A.Darst. Complete Structural Model of Escherichia Coli Rna Polymerase From A Hybrid Approach. Plos Biol. V. 8 00483 2010.
ISSN: ISSN 1544-9173
PubMed: 20856905
DOI: 10.1371/JOURNAL.PBIO.1000483
Page generated: Wed Dec 16 04:33:09 2020

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