Zinc in PDB 3ltv: Mouse-Human SOD1 Chimera

All present enzymatic activity of Mouse-Human SOD1 Chimera:
1.15.1.1;

The structure of Mouse-Human SOD1 Chimera, PDB code: 3ltv was solved by S.V.Seetharaman, A.B.Taylor, P.J.Hart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.56 / 2.45
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	127.480, 127.480, 102.494, 90.00, 90.00, 120.00
R / Rfree (%)	19.5 / 26.5

The binding sites of Zinc atom in the Mouse-Human SOD1 Chimera (pdb code 3ltv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Mouse-Human SOD1 Chimera, PDB code: 3ltv:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Mouse-Human SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mouse-Human SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1001 b:23.9 occ:1.00 OD2 A:ASP83 2.0 24.1 1.0 ND1 A:HIS80 2.1 28.7 1.0 ND1 A:HIS63 2.1 27.4 1.0 ND1 A:HIS71 2.1 24.2 1.0 CG A:ASP83 2.6 27.2 1.0 OD1 A:ASP83 2.7 26.6 1.0 CE1 A:HIS80 2.9 24.6 1.0 CE1 A:HIS71 3.0 24.3 1.0 CE1 A:HIS63 3.0 24.9 1.0 CG A:HIS63 3.1 22.8 1.0 CG A:HIS80 3.2 27.3 1.0 CG A:HIS71 3.2 25.0 1.0 CB A:HIS63 3.5 20.2 1.0 CB A:HIS71 3.5 24.5 1.0 CB A:HIS80 3.6 28.3 1.0 O A:LYS136 3.7 24.3 1.0 CA A:HIS71 3.9 26.9 1.0 NE2 A:HIS80 4.1 26.7 1.0 CB A:ASP83 4.1 25.9 1.0 NE2 A:HIS63 4.2 22.0 1.0 NE2 A:HIS71 4.2 26.9 1.0 CD2 A:HIS80 4.2 26.0 1.0 CD2 A:HIS63 4.2 23.2 1.0 CD2 A:HIS71 4.3 26.9 1.0 CA A:ASP83 4.6 22.7 1.0 O A:HOH161 4.7 22.4 1.0 C A:LYS136 4.7 26.9 1.0 N A:GLY72 4.7 22.7 1.0 N A:HIS80 4.7 28.3 1.0 CA A:HIS80 4.8 27.5 1.0 C A:HIS71 4.9 26.8 1.0 N A:HIS71 4.9 28.1 1.0 ND1 A:HIS46 4.9 26.7 1.0 N A:ASP83 4.9 26.3 1.0 O A:GLY72 5.0 26.8 1.0

Zinc binding site 2 out of 6 in the Mouse-Human SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Mouse-Human SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1001 b:30.6 occ:1.00 OD2 B:ASP83 1.9 26.9 1.0 ND1 B:HIS71 2.1 33.5 1.0 ND1 B:HIS80 2.1 33.3 1.0 ND1 B:HIS63 2.2 28.6 1.0 CG B:ASP83 2.7 32.3 1.0 OD1 B:ASP83 2.9 34.6 1.0 CE1 B:HIS71 3.0 31.3 1.0 CE1 B:HIS80 3.0 32.6 1.0 CG B:HIS80 3.1 27.8 1.0 CG B:HIS63 3.1 27.3 1.0 CG B:HIS71 3.2 33.6 1.0 CE1 B:HIS63 3.2 29.5 1.0 CB B:HIS63 3.4 26.9 1.0 CB B:HIS80 3.5 31.9 1.0 CB B:HIS71 3.6 33.0 1.0 O B:LYS136 3.9 40.2 1.0 CA B:HIS71 3.9 34.9 1.0 NE2 B:HIS80 4.1 36.9 1.0 CD2 B:HIS80 4.1 31.5 1.0 NE2 B:HIS71 4.1 35.0 1.0 CB B:ASP83 4.2 30.7 1.0 CD2 B:HIS71 4.3 34.6 1.0 CD2 B:HIS63 4.3 30.2 1.0 NE2 B:HIS63 4.3 34.5 1.0 CA B:ASP83 4.6 30.3 1.0 N B:HIS80 4.6 34.1 1.0 CA B:HIS80 4.7 30.4 1.0 N B:ASP83 4.8 27.8 1.0 CA B:HIS63 4.9 30.3 1.0 N B:GLY72 4.9 35.9 1.0 N B:HIS71 4.9 34.4 1.0 O B:HOH166 4.9 31.7 1.0 C B:LYS136 4.9 37.9 1.0 C B:HIS71 5.0 37.8 1.0

Zinc binding site 3 out of 6 in the Mouse-Human SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Mouse-Human SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1001 b:98.4 occ:1.00 ND1 C:HIS80 2.1 88.6 1.0 ND1 C:HIS71 2.6 93.0 1.0 OD1 C:ASP83 2.6 82.8 1.0 CG C:HIS80 2.6 83.9 1.0 ND1 C:HIS63 2.8 87.4 1.0 CG C:ASP83 2.9 85.6 1.0 CB C:HIS80 3.0 73.3 1.0 CE1 C:HIS80 3.0 90.8 1.0 OD2 C:ASP83 3.2 81.9 1.0 CG C:HIS63 3.3 82.3 1.0 CE1 C:HIS71 3.4 90.0 1.0 CE1 C:HIS63 3.5 85.5 1.0 CB C:HIS63 3.5 77.9 1.0 CG C:HIS71 3.6 93.9 1.0 CD2 C:HIS80 3.6 88.5 1.0 CB C:ASP83 3.7 84.0 1.0 NE2 C:HIS80 3.8 92.9 1.0 N C:HIS80 3.9 87.0 1.0 CB C:HIS71 3.9 95.0 1.0 O C:LYS136 3.9 92.6 1.0 CA C:HIS71 4.0 93.6 1.0 CA C:HIS80 4.0 82.4 1.0 CD2 C:HIS63 4.1 82.1 1.0 NE2 C:HIS63 4.2 81.3 1.0 CA C:ASP83 4.4 81.6 1.0 NE2 C:HIS71 4.5 89.8 1.0 CD2 C:HIS71 4.6 91.5 1.0 O C:LYS70 4.8 91.5 1.0 N C:HIS71 4.8 93.5 1.0 O C:HIS80 4.8 74.3 1.0 N C:ASP83 4.9 79.1 1.0 C C:HIS80 4.9 80.6 1.0 N C:GLY72 4.9 96.5 1.0 C C:HIS71 5.0 95.8 1.0

Zinc binding site 4 out of 6 in the Mouse-Human SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Mouse-Human SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1001 b:38.8 occ:1.00 ND1 D:HIS71 1.9 30.0 1.0 ND1 D:HIS63 2.0 35.9 1.0 OD1 D:ASP83 2.1 39.2 1.0 CE1 D:HIS71 2.7 32.4 1.0 ND1 D:HIS80 2.7 45.9 1.0 CG D:ASP83 2.7 39.3 1.0 OD2 D:ASP83 2.8 38.9 1.0 CE1 D:HIS63 2.8 31.6 1.0 CG D:HIS71 3.0 38.4 1.0 CG D:HIS63 3.0 34.6 1.0 CE1 D:HIS80 3.4 42.3 1.0 CG D:HIS80 3.4 48.8 1.0 CB D:HIS63 3.5 38.2 1.0 CB D:HIS71 3.6 41.9 1.0 CB D:HIS80 3.7 43.3 1.0 NE2 D:HIS71 3.9 34.1 1.0 O D:LYS136 3.9 37.1 1.0 CA D:HIS71 4.0 43.9 1.0 NE2 D:HIS63 4.0 30.4 1.0 CD2 D:HIS71 4.1 37.5 1.0 CD2 D:HIS63 4.1 31.8 1.0 CB D:ASP83 4.1 38.6 1.0 NE2 D:HIS80 4.3 52.0 1.0 CD2 D:HIS80 4.3 49.2 1.0 CA D:ASP83 4.6 38.0 1.0 N D:GLY72 4.6 39.3 1.0 C D:LYS136 4.7 40.5 1.0 N D:HIS80 4.8 43.6 1.0 C D:HIS71 4.8 44.2 1.0 N D:ASP83 4.8 35.7 1.0 CA D:HIS80 4.9 41.3 1.0

Zinc binding site 5 out of 6 in the Mouse-Human SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Mouse-Human SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn1001 b:60.9 occ:1.00 ND1 E:HIS80 1.9 54.9 1.0 ND1 E:HIS63 2.2 56.2 1.0 OD2 E:ASP83 2.3 61.6 1.0 ND1 E:HIS71 2.4 63.8 1.0 OD1 E:ASP83 2.5 61.6 1.0 CG E:ASP83 2.7 61.5 1.0 CE1 E:HIS80 2.8 60.1 1.0 CG E:HIS80 3.1 56.1 1.0 CG E:HIS63 3.1 55.8 1.0 CB E:HIS63 3.3 54.5 1.0 CE1 E:HIS63 3.3 57.1 1.0 CE1 E:HIS71 3.3 63.8 1.0 CG E:HIS71 3.4 61.6 1.0 CB E:HIS80 3.5 56.4 1.0 CB E:HIS71 3.7 62.9 1.0 CA E:HIS71 3.8 65.0 1.0 NE2 E:HIS80 3.9 63.0 1.0 O E:LYS136 4.0 65.6 1.0 CD2 E:HIS80 4.1 59.2 1.0 CB E:ASP83 4.2 59.4 1.0 CD2 E:HIS63 4.3 55.6 1.0 NE2 E:HIS63 4.3 57.5 1.0 NE2 E:HIS71 4.5 64.4 1.0 N E:GLY72 4.5 65.0 1.0 CD2 E:HIS71 4.5 66.2 1.0 N E:HIS80 4.5 59.0 1.0 CA E:HIS80 4.7 55.5 1.0 ND1 E:HIS46 4.7 53.9 1.0 C E:HIS71 4.7 67.0 1.0 CA E:HIS63 4.8 57.7 1.0 N E:HIS71 4.8 61.7 1.0 O E:GLY72 4.9 67.9 1.0 CA E:ASP83 4.9 59.6 1.0

Zinc binding site 6 out of 6 in the Mouse-Human SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Mouse-Human SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn1001 b:25.5 occ:1.00 ND1 F:HIS63 2.0 24.3 1.0 OD2 F:ASP83 2.0 31.0 1.0 ND1 F:HIS80 2.1 27.2 1.0 ND1 F:HIS71 2.1 25.4 1.0 CG F:ASP83 2.7 27.4 1.0 CE1 F:HIS63 2.8 22.8 1.0 OD1 F:ASP83 2.9 25.8 1.0 CE1 F:HIS80 3.0 28.5 1.0 CG F:HIS63 3.1 27.6 1.0 CE1 F:HIS71 3.1 27.0 1.0 CG F:HIS71 3.1 27.3 1.0 CG F:HIS80 3.2 28.9 1.0 CB F:HIS71 3.4 30.9 1.0 CB F:HIS63 3.5 25.3 1.0 CB F:HIS80 3.6 26.8 1.0 O F:LYS136 3.8 28.5 1.0 CA F:HIS71 3.8 29.7 1.0 NE2 F:HIS63 4.0 27.2 1.0 NE2 F:HIS80 4.1 31.6 1.0 CD2 F:HIS63 4.1 24.9 1.0 CB F:ASP83 4.1 23.9 1.0 NE2 F:HIS71 4.2 24.9 1.0 CD2 F:HIS80 4.2 29.3 1.0 CD2 F:HIS71 4.2 24.7 1.0 N F:GLY72 4.6 30.0 1.0 N F:HIS80 4.7 27.5 1.0 CA F:ASP83 4.7 21.4 1.0 C F:HIS71 4.7 27.9 1.0 CA F:HIS80 4.8 26.2 1.0 C F:LYS136 4.8 34.3 1.0 ND1 F:HIS46 4.8 30.7 1.0 N F:HIS71 4.8 27.5 1.0 N F:ASP83 5.0 23.4 1.0

S.V.Seetharaman, A.B.Taylor, S.Holloway, P.J.Hart. Structures of Mouse SOD1 and Human/Mouse SOD1 Chimeras. Arch.Biochem.Biophys. V. 503 183 2010.
ISSN: ISSN 0003-9861
PubMed: 20727846
DOI: 10.1016/J.ABB.2010.08.014