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Zinc in PDB 3lmc: Crystal Structure of Zinc-Dependent Peptidase From Methanocorpusculum Labreanum (Strain Z), Northeast Structural Genomics Consortium Target MUR16

Protein crystallography data

The structure of Crystal Structure of Zinc-Dependent Peptidase From Methanocorpusculum Labreanum (Strain Z), Northeast Structural Genomics Consortium Target MUR16, PDB code: 3lmc was solved by A.Kuzin, S.Ashok, S.Vorobiev, J.Seetharaman, P.Patel, R.Xiao, C.Ciccosanti, D.Lee, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.37 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 89.627, 60.889, 47.859, 90.00, 101.19, 90.00
R / Rfree (%) 21.2 / 25.8

Other elements in 3lmc:

The structure of Crystal Structure of Zinc-Dependent Peptidase From Methanocorpusculum Labreanum (Strain Z), Northeast Structural Genomics Consortium Target MUR16 also contains other interesting chemical elements:

Iron (Fe) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Zinc-Dependent Peptidase From Methanocorpusculum Labreanum (Strain Z), Northeast Structural Genomics Consortium Target MUR16 (pdb code 3lmc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Zinc-Dependent Peptidase From Methanocorpusculum Labreanum (Strain Z), Northeast Structural Genomics Consortium Target MUR16, PDB code: 3lmc:

Zinc binding site 1 out of 1 in 3lmc

Go back to Zinc Binding Sites List in 3lmc
Zinc binding site 1 out of 1 in the Crystal Structure of Zinc-Dependent Peptidase From Methanocorpusculum Labreanum (Strain Z), Northeast Structural Genomics Consortium Target MUR16


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Zinc-Dependent Peptidase From Methanocorpusculum Labreanum (Strain Z), Northeast Structural Genomics Consortium Target MUR16 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn212

b:38.6
occ:1.00
NE2 A:HIS159 2.2 51.7 1.0
NE2 A:HIS149 2.2 33.9 1.0
NE2 A:HIS153 2.2 23.4 1.0
O A:HOH230 2.4 23.6 1.0
CD2 A:HIS149 3.1 33.2 1.0
CD2 A:HIS159 3.1 48.0 1.0
CE1 A:HIS159 3.1 52.3 1.0
CD2 A:HIS153 3.1 20.9 1.0
O A:HOH292 3.2 56.9 1.0
CE1 A:HIS153 3.2 22.4 1.0
CE1 A:HIS149 3.2 38.5 1.0
OE1 A:GLU150 4.2 37.2 1.0
ND1 A:HIS159 4.2 53.1 1.0
CG A:HIS159 4.2 46.8 1.0
CG A:HIS149 4.3 34.6 1.0
O A:HOH253 4.3 39.0 1.0
ND1 A:HIS153 4.3 23.2 1.0
ND1 A:HIS149 4.3 42.8 1.0
CG A:HIS153 4.3 21.8 1.0
SG A:CYS169 4.6 41.2 1.0
OE2 A:GLU150 4.8 39.3 1.0
CD A:GLU150 4.9 33.0 1.0
O A:HOH226 4.9 31.9 1.0
CB A:CYS169 5.0 28.9 1.0

Reference:

A.Kuzin, S.Ashok, S.Vorobiev, J.Seetharaman, P.Patel, R.Xiao, C.Ciccosanti, D.Lee, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt. Northeast Structural Genomics Consortium Target MUR16 To Be Published.
Page generated: Wed Dec 16 04:32:35 2020

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