Zinc in PDB 3lm9: Crystal Structure of Fructokinase with Adp and Fructose Bound in the Active Site

All present enzymatic activity of Crystal Structure of Fructokinase with Adp and Fructose Bound in the Active Site:
2.7.1.4;

The structure of Crystal Structure of Fructokinase with Adp and Fructose Bound in the Active Site, PDB code: 3lm9 was solved by B.Nocek, A.Stein, M.Cuff, L.Volkart, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.45
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	112.333, 112.333, 73.958, 90.00, 90.00, 120.00
R / Rfree (%)	15.7 / 19.6

The binding sites of Zinc atom in the Crystal Structure of Fructokinase with Adp and Fructose Bound in the Active Site (pdb code 3lm9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Fructokinase with Adp and Fructose Bound in the Active Site, PDB code: 3lm9:

Zinc binding site 1 out of 1 in the Crystal Structure of Fructokinase with Adp and Fructose Bound in the Active Site


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Fructokinase with Adp and Fructose Bound in the Active Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:35.8 occ:1.00 ND1 A:HIS153 2.1 22.0 1.0 ND1 A:HIS171 2.1 20.7 1.0 SG A:CYS174 2.3 21.0 1.0 SG A:CYS168 2.4 26.1 1.0 CE1 A:HIS153 3.0 26.8 1.0 CE1 A:HIS171 3.0 22.1 1.0 CG A:HIS153 3.1 24.4 1.0 CG A:HIS171 3.1 21.9 1.0 CB A:CYS168 3.3 25.1 1.0 CB A:HIS171 3.4 23.1 1.0 CB A:HIS153 3.4 22.5 1.0 CB A:CYS174 3.4 22.6 1.0 CA A:HIS153 3.9 22.9 1.0 NE2 A:HIS153 4.2 24.6 1.0 N A:HIS171 4.2 23.2 1.0 NE2 A:HIS171 4.2 20.6 1.0 CD2 A:HIS153 4.2 24.6 1.0 CD2 A:HIS171 4.2 19.2 1.0 CA A:HIS171 4.4 23.4 1.0 O A:HIS153 4.6 24.8 1.0 CB A:TYR170 4.7 22.5 1.0 C A:HIS153 4.7 23.1 1.0 CA A:CYS168 4.7 25.6 1.0 CA A:CYS174 4.8 22.9 1.0 O A:GLY152 5.0 19.8 1.0 N A:HIS153 5.0 21.4 1.0

B.Nocek, A.J.Stein, R.Jedrzejczak, M.E.Cuff, H.Li, L.Volkart, A.Joachimiak. Structural Studies of Rok Fructokinase Ydhr From Bacillus Subtilis: Insights Into Substrate Binding and Fructose Specificity. J.Mol.Biol. V. 406 325 2011.
ISSN: ISSN 0022-2836
PubMed: 21185308
DOI: 10.1016/J.JMB.2010.12.021