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Zinc in PDB 3lec: The Crystal Structure of A Protein in the Nadb-Rossmann Superfamily From Streptococcus Agalactiae to 1.8A

Protein crystallography data

The structure of The Crystal Structure of A Protein in the Nadb-Rossmann Superfamily From Streptococcus Agalactiae to 1.8A, PDB code: 3lec was solved by A.J.Stein, C.Hatzos, K.Buck, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.93 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 56.444, 62.871, 61.784, 90.00, 107.77, 90.00
R / Rfree (%) 20.7 / 24.8

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of A Protein in the Nadb-Rossmann Superfamily From Streptococcus Agalactiae to 1.8A (pdb code 3lec). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of A Protein in the Nadb-Rossmann Superfamily From Streptococcus Agalactiae to 1.8A, PDB code: 3lec:

Zinc binding site 1 out of 1 in 3lec

Go back to Zinc Binding Sites List in 3lec
Zinc binding site 1 out of 1 in the The Crystal Structure of A Protein in the Nadb-Rossmann Superfamily From Streptococcus Agalactiae to 1.8A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of A Protein in the Nadb-Rossmann Superfamily From Streptococcus Agalactiae to 1.8A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn228

b:21.3
occ:1.00
OD1 A:ASP137 2.0 22.6 1.0
ND1 A:HIS162 2.1 21.2 1.0
O A:HOH346 2.2 11.9 1.0
CG A:ASP137 2.7 22.2 1.0
OD2 A:ASP137 2.7 27.3 1.0
CE1 A:HIS162 3.0 24.3 1.0
CG A:HIS162 3.2 21.1 1.0
CB A:HIS162 3.6 21.5 1.0
O A:HOH277 3.9 37.4 1.0
NE2 A:HIS162 4.2 20.9 1.0
CB A:ASP137 4.2 20.3 1.0
CD2 A:HIS162 4.3 24.5 1.0
CA A:HIS162 4.4 21.0 1.0
O A:HOH299 4.5 32.2 1.0
CA A:ASP137 4.8 20.6 1.0

Reference:

A.J.Stein, C.Hatzos, K.Buck, A.Joachimiak. The Crystal Structure of A Protein in the Nadb-Rossmann Superfamily From Streptococcus Agalactiae to 1.8A To Be Published.
Page generated: Wed Dec 16 04:32:10 2020

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