Atomistry » Zinc » PDB 3l2v-3ljt » 3l9y
Atomistry »
  Zinc »
    PDB 3l2v-3ljt »
      3l9y »

Zinc in PDB 3l9y: Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis

Enzymatic activity of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis

All present enzymatic activity of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis:
1.15.1.1;

Protein crystallography data

The structure of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis, PDB code: 3l9y was solved by N.-N.Zhang, Y.-X.He, W.-F.Li, F.Zhao, L.-F.Yan, G.-Z.Zhang, Y.-B.Teng, J.Yu, Y.Chen, C.-Z.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.80
Space group P 64
Cell size a, b, c (Å), α, β, γ (°) 111.493, 111.493, 39.886, 90.00, 90.00, 120.00
R / Rfree (%) 22.3 / 25.8

Other elements in 3l9y:

The structure of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis (pdb code 3l9y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis, PDB code: 3l9y:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3l9y

Go back to Zinc Binding Sites List in 3l9y
Zinc binding site 1 out of 2 in the Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn155

b:22.6
occ:1.00
ND1 A:HIS79 2.0 21.6 1.0
ND1 A:HIS62 2.0 20.8 1.0
OD1 A:ASP82 2.0 20.5 1.0
ND1 A:HIS70 2.1 21.0 1.0
CG A:ASP82 2.8 21.4 1.0
OD2 A:ASP82 2.8 22.5 1.0
CE1 A:HIS79 2.9 22.9 1.0
CE1 A:HIS62 3.0 19.7 1.0
CE1 A:HIS70 3.0 20.9 1.0
CG A:HIS62 3.0 21.2 1.0
CG A:HIS79 3.1 20.6 1.0
CG A:HIS70 3.1 22.2 1.0
CB A:HIS62 3.4 21.3 1.0
CB A:HIS70 3.5 22.9 1.0
CB A:HIS79 3.5 21.6 1.0
CA A:HIS70 3.8 23.6 1.0
NE2 A:HIS79 4.1 22.3 1.0
O A:THR136 4.1 27.4 1.0
NE2 A:HIS62 4.1 20.6 1.0
CD2 A:HIS79 4.2 20.9 1.0
CD2 A:HIS62 4.2 19.5 1.0
NE2 A:HIS70 4.2 20.4 1.0
CB A:ASP82 4.2 21.1 1.0
CD2 A:HIS70 4.3 19.1 1.0
N A:GLY71 4.5 23.1 1.0
N A:HIS79 4.6 22.3 1.0
CA A:HIS79 4.7 21.8 1.0
C A:HIS70 4.7 23.3 1.0
O A:HOH163 4.8 21.7 1.0
CA A:ASP82 4.8 21.5 1.0
O A:GLY71 4.8 22.4 1.0
N A:HIS70 4.9 24.4 1.0
CD2 A:HIS45 4.9 21.1 1.0
CA A:HIS62 4.9 21.2 1.0

Zinc binding site 2 out of 2 in 3l9y

Go back to Zinc Binding Sites List in 3l9y
Zinc binding site 2 out of 2 in the Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn155

b:22.3
occ:1.00
ND1 B:HIS79 1.9 19.8 1.0
OD1 B:ASP82 2.0 18.4 1.0
ND1 B:HIS70 2.1 23.5 1.0
ND1 B:HIS62 2.2 19.1 1.0
CG B:ASP82 2.7 21.2 1.0
CE1 B:HIS79 2.7 22.3 1.0
OD2 B:ASP82 2.8 22.5 1.0
CE1 B:HIS70 3.0 21.8 1.0
CG B:HIS79 3.1 19.9 1.0
CG B:HIS62 3.1 22.3 1.0
CE1 B:HIS62 3.2 21.7 1.0
CG B:HIS70 3.2 23.9 1.0
CB B:HIS62 3.4 22.3 1.0
CB B:HIS79 3.6 21.3 1.0
CB B:HIS70 3.6 24.3 1.0
CA B:HIS70 3.8 24.4 1.0
NE2 B:HIS79 3.9 21.2 1.0
O B:THR136 4.0 27.1 1.0
CD2 B:HIS79 4.1 20.4 1.0
CB B:ASP82 4.2 20.9 1.0
NE2 B:HIS70 4.2 23.5 1.0
NE2 B:HIS62 4.3 22.4 1.0
CD2 B:HIS62 4.3 20.8 1.0
CD2 B:HIS70 4.3 23.2 1.0
O B:HOH162 4.6 23.5 1.0
N B:GLY71 4.6 23.6 1.0
N B:HIS79 4.6 22.4 1.0
CA B:HIS79 4.7 22.0 1.0
CA B:ASP82 4.7 21.3 1.0
C B:HIS70 4.7 24.3 1.0
O B:GLY71 4.8 22.7 1.0
N B:HIS70 4.8 24.9 1.0
CD2 B:HIS45 4.9 19.7 1.0
CA B:HIS62 4.9 22.9 1.0

Reference:

N.N.Zhang, Y.X.He, W.F.Li, Y.B.Teng, J.Yu, Y.Chen, C.Z.Zhou. Crystal Structures of Holo and Cu-Deficient Cu/Zn-Sod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis. Proteins V. 78 1999 2010.
ISSN: ESSN 1097-0134
PubMed: 20310068
DOI: 10.1002/PROT.22709
Page generated: Sat Oct 26 08:26:57 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy