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Zinc in PDB 3l2w: Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Manganese and GS9137 (Elvitegravir)

Protein crystallography data

The structure of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Manganese and GS9137 (Elvitegravir), PDB code: 3l2w was solved by S.Hare, S.S.Gupta, P.Cherepanov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.90 / 3.20
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 157.880, 157.880, 125.090, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 22

Other elements in 3l2w:

The structure of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Manganese and GS9137 (Elvitegravir) also contains other interesting chemical elements:

Fluorine (F) 1 atom
Manganese (Mn) 3 atoms
Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Manganese and GS9137 (Elvitegravir) (pdb code 3l2w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Manganese and GS9137 (Elvitegravir), PDB code: 3l2w:

Zinc binding site 1 out of 1 in 3l2w

Go back to Zinc Binding Sites List in 3l2w
Zinc binding site 1 out of 1 in the Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Manganese and GS9137 (Elvitegravir)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Manganese and GS9137 (Elvitegravir) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn393

b:98.3
occ:1.00
NE2 A:HIS62 1.9 89.2 1.0
ND1 A:HIS66 2.1 95.0 1.0
SG A:CYS99 2.1 91.8 1.0
SG A:CYS96 2.2 0.0 1.0
CE1 A:HIS62 2.8 88.5 1.0
CE1 A:HIS66 3.0 97.4 1.0
CD2 A:HIS62 3.0 91.0 1.0
CG A:HIS66 3.1 95.4 1.0
CB A:CYS96 3.3 0.2 1.0
CB A:CYS99 3.3 93.0 1.0
CB A:HIS66 3.4 94.3 1.0
N A:CYS99 3.9 96.6 1.0
CA A:HIS66 3.9 93.6 1.0
ND1 A:HIS62 4.0 89.3 1.0
CG A:HIS62 4.1 91.6 1.0
NE2 A:HIS66 4.1 98.7 1.0
CA A:CYS99 4.2 94.1 1.0
CD2 A:HIS66 4.2 96.4 1.0
O A:HIS66 4.5 92.4 1.0
C A:HIS66 4.5 92.5 1.0
CA A:CYS96 4.7 0.6 1.0
CB A:GLN98 4.8 0.7 1.0
OD1 A:ASN63 4.9 99.0 1.0
C A:GLN98 5.0 98.6 1.0

Reference:

S.Hare, S.S.Gupta, E.Valkov, A.Engelman, P.Cherepanov. Retroviral Intasome Assembly and Inhibition of Dna Strand Transfer Nature V. 464 232 2010.
ISSN: ISSN 0028-0836
PubMed: 20118915
DOI: 10.1038/NATURE08784
Page generated: Wed Dec 16 04:31:47 2020

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