Atomistry » Zinc » PDB 3l2r-3ljg » 3l2r
Atomistry »
  Zinc »
    PDB 3l2r-3ljg »
      3l2r »

Zinc in PDB 3l2r: Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium

Protein crystallography data

The structure of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium, PDB code: 3l2r was solved by S.Hare, S.S.Gupta, P.Cherepanov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.00 / 2.88
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 158.480, 158.480, 124.190, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 22.2

Other elements in 3l2r:

The structure of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium (pdb code 3l2r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium, PDB code: 3l2r:

Zinc binding site 1 out of 1 in 3l2r

Go back to Zinc Binding Sites List in 3l2r
Zinc binding site 1 out of 1 in the Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn393

b:62.6
occ:1.00
NE2 A:HIS62 1.9 56.0 1.0
ND1 A:HIS66 2.1 57.7 1.0
SG A:CYS99 2.2 60.4 1.0
SG A:CYS96 2.3 66.6 1.0
CE1 A:HIS62 2.8 54.8 1.0
CD2 A:HIS62 3.0 57.7 1.0
CG A:HIS66 3.1 58.4 1.0
CE1 A:HIS66 3.1 60.7 1.0
CB A:CYS99 3.3 58.4 1.0
CB A:CYS96 3.3 65.8 1.0
CB A:HIS66 3.3 57.0 1.0
N A:CYS99 3.8 60.9 1.0
CA A:HIS66 3.9 56.7 1.0
ND1 A:HIS62 3.9 55.2 1.0
CA A:CYS99 4.0 59.1 1.0
CG A:HIS62 4.1 56.8 1.0
NE2 A:HIS66 4.2 61.3 1.0
CD2 A:HIS66 4.2 58.6 1.0
C A:HIS66 4.5 55.7 1.0
O A:HIS66 4.6 56.1 1.0
CA A:CYS96 4.7 68.0 1.0
CB A:GLN98 4.8 66.6 1.0
C A:GLN98 4.8 62.8 1.0
OD1 A:ASN63 4.9 65.7 1.0

Reference:

S.Hare, S.S.Gupta, E.Valkov, A.Engelman, P.Cherepanov. Retroviral Intasome Assembly and Inhibition of Dna Strand Transfer Nature V. 464 232 2010.
ISSN: ISSN 0028-0836
PubMed: 20118915
DOI: 10.1038/NATURE08784
Page generated: Wed Dec 16 04:31:44 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy