Atomistry » Zinc » PDB 2yqm-2yts » 3kl9
Atomistry »
  Zinc »
    PDB 2yqm-2yts »
      3kl9 »

Zinc in PDB 3kl9: Crystal Structure of Pepa From Streptococcus Pneumoniae

Enzymatic activity of Crystal Structure of Pepa From Streptococcus Pneumoniae

All present enzymatic activity of Crystal Structure of Pepa From Streptococcus Pneumoniae:
3.4.11.7;

Protein crystallography data

The structure of Crystal Structure of Pepa From Streptococcus Pneumoniae, PDB code: 3kl9 was solved by K.K.Kim, S.Lee, D.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.43 / 2.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 138.296, 118.344, 160.299, 90.00, 106.35, 90.00
R / Rfree (%) 20 / 24.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Pepa From Streptococcus Pneumoniae (pdb code 3kl9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 24 binding sites of Zinc where determined in the Crystal Structure of Pepa From Streptococcus Pneumoniae, PDB code: 3kl9:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10; 11; 12; 13; 14; 15; 16; 17; 18; 19; 20; 21; 22; 23; 24;

Zinc binding site 1 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 1 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn355

b:63.4
occ:1.00
OD2 A:ASP236 2.2 27.1 1.0
OD1 A:ASP181 2.3 30.7 1.0
CE1 A:HIS66 2.5 21.1 1.0
OD1 A:ASP236 2.8 28.9 1.0
CG A:ASP236 2.9 27.6 1.0
CG A:ASP181 3.1 29.2 1.0
ZN A:ZN356 3.3 64.5 1.0
NE2 A:HIS66 3.3 20.4 1.0
OD2 A:ASP181 3.6 30.5 1.0
ND1 A:HIS66 3.6 21.3 1.0
OE1 A:GLU213 3.6 27.8 1.0
OE1 A:GLU214 3.8 27.4 1.0
OE2 A:GLU213 3.9 27.7 1.0
CD A:GLU213 4.0 27.0 1.0
CB A:ASN182 4.0 27.5 1.0
O A:CYS237 4.2 26.9 1.0
CB A:ASP181 4.3 27.5 1.0
CB A:ASP236 4.3 26.9 1.0
CG A:ASN182 4.4 28.6 1.0
CD2 A:HIS66 4.6 20.6 1.0
CD A:GLU214 4.6 26.8 1.0
OD1 A:ASN182 4.7 29.0 1.0
N A:CYS237 4.7 26.9 1.0
CA A:ASP181 4.7 27.3 1.0
CG A:HIS66 4.7 21.1 1.0
OE2 A:GLU214 4.9 27.6 1.0
C A:ASP181 4.9 27.3 1.0
CA A:ASN182 5.0 27.3 1.0

Zinc binding site 2 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 2 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn356

b:64.5
occ:1.00
OD2 A:ASP181 2.2 30.5 1.0
OE1 A:GLU214 2.3 27.4 1.0
NE2 A:HIS318 2.4 26.1 1.0
OE2 A:GLU214 2.4 27.6 1.0
CD A:GLU214 2.7 26.8 1.0
CG A:ASP181 3.0 29.2 1.0
OD1 A:ASP181 3.1 30.7 1.0
ZN A:ZN355 3.3 63.4 1.0
CD2 A:HIS318 3.3 25.3 1.0
CE1 A:HIS318 3.3 25.9 1.0
OE1 A:GLU213 3.9 27.8 1.0
CG A:GLU214 4.2 25.1 1.0
ND1 A:HIS318 4.4 25.9 1.0
CB A:ASP181 4.5 27.5 1.0
CG A:HIS318 4.5 24.7 1.0
NE2 A:HIS66 4.7 20.4 1.0
CE1 A:HIS66 4.7 21.1 1.0
CD A:GLU213 4.8 27.0 1.0
CG1 A:VAL70 4.9 22.5 1.0
OE2 A:GLU213 4.9 27.7 1.0

Zinc binding site 3 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 3 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn355

b:77.3
occ:1.00
OD2 B:ASP236 2.3 28.0 1.0
OD1 B:ASP181 2.3 29.0 1.0
OD1 B:ASP236 2.6 30.1 1.0
CE1 B:HIS66 2.7 24.0 1.0
CG B:ASP236 2.7 28.3 1.0
CG B:ASP181 3.1 26.9 1.0
OD2 B:ASP181 3.5 27.9 1.0
NE2 B:HIS66 3.5 24.1 1.0
ZN B:ZN356 3.5 57.9 1.0
OE2 B:GLU213 3.6 28.4 1.0
OE1 B:GLU213 3.7 27.6 1.0
ND1 B:HIS66 3.8 23.8 1.0
CD B:GLU213 3.8 27.7 1.0
O B:CYS237 3.9 26.2 1.0
CB B:ASN182 4.1 25.8 1.0
CB B:ASP236 4.2 27.0 1.0
CB B:ASP181 4.2 26.1 1.0
CG B:ASN182 4.6 25.9 1.0
N B:CYS237 4.7 26.6 1.0
CA B:ASP181 4.7 25.8 1.0
OE1 B:GLU214 4.8 29.4 1.0
CD2 B:HIS66 4.8 23.1 1.0
OE2 B:GLU214 4.9 28.0 1.0
CG B:HIS66 4.9 23.8 1.0
CG B:GLU213 4.9 26.3 1.0
OD1 B:ASN182 4.9 26.9 1.0
CA B:ASP236 5.0 26.8 1.0
C B:ASP181 5.0 25.8 1.0

Zinc binding site 4 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 4 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn356

b:57.9
occ:1.00
OE2 B:GLU214 2.1 28.0 1.0
NE2 B:HIS318 2.2 25.9 1.0
OD2 B:ASP181 2.3 27.9 1.0
OE1 B:GLU214 2.7 29.4 1.0
CD B:GLU214 2.8 28.1 1.0
CE1 B:HIS318 3.1 25.9 1.0
CG B:ASP181 3.1 26.9 1.0
OD1 B:ASP181 3.2 29.0 1.0
CD2 B:HIS318 3.3 25.0 1.0
ZN B:ZN355 3.5 77.3 1.0
OE1 B:GLU213 3.7 27.6 1.0
O B:HOH371 4.0 22.4 1.0
CG B:GLU214 4.2 26.8 1.0
ND1 B:HIS318 4.3 25.1 1.0
CG B:HIS318 4.4 24.2 1.0
OE2 B:GLU213 4.5 28.4 1.0
CB B:ASP181 4.5 26.1 1.0
CD B:GLU213 4.6 27.7 1.0
CG1 B:VAL70 4.6 22.1 1.0
NE2 B:HIS66 4.7 24.1 1.0
CE1 B:HIS66 4.9 24.0 1.0
CB B:GLU214 4.9 26.3 1.0

Zinc binding site 5 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 5 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn355

b:65.6
occ:1.00
OD1 C:ASP181 2.3 29.6 1.0
OD2 C:ASP236 2.5 29.6 1.0
CE1 C:HIS66 2.7 21.4 1.0
OD1 C:ASP236 2.7 29.8 1.0
CG C:ASP236 2.9 28.3 1.0
CG C:ASP181 3.2 27.6 1.0
ZN C:ZN356 3.3 66.7 1.0
NE2 C:HIS66 3.3 22.0 1.0
OE1 C:GLU213 3.4 24.0 1.0
OD2 C:ASP181 3.6 28.0 1.0
OE2 C:GLU213 3.7 26.0 1.0
ND1 C:HIS66 3.7 21.1 1.0
CD C:GLU213 3.8 24.6 1.0
OE1 C:GLU214 4.3 27.6 1.0
CB C:ASN182 4.3 26.9 1.0
O C:CYS237 4.3 27.5 1.0
OE2 C:GLU214 4.4 26.0 1.0
CB C:ASP181 4.4 26.7 1.0
CB C:ASP236 4.4 27.0 1.0
CD2 C:HIS66 4.6 21.2 1.0
CD C:GLU214 4.6 26.5 1.0
CG C:HIS66 4.8 21.9 1.0
CG C:ASN182 4.8 27.1 1.0
CG C:GLU213 4.9 24.8 1.0
CA C:ASP181 5.0 26.6 1.0

Zinc binding site 6 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 6 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn356

b:66.7
occ:1.00
OE2 C:GLU214 2.2 26.0 1.0
NE2 C:HIS318 2.3 26.3 1.0
OD2 C:ASP181 2.4 28.0 1.0
OE1 C:GLU214 2.6 27.6 1.0
CD C:GLU214 2.7 26.5 1.0
CG C:ASP181 3.2 27.6 1.0
ZN C:ZN355 3.3 65.6 1.0
OD1 C:ASP181 3.3 29.6 1.0
CD2 C:HIS318 3.3 26.2 1.0
CE1 C:HIS318 3.3 26.4 1.0
OE1 C:GLU213 4.0 24.0 1.0
CG C:GLU214 4.2 25.6 1.0
ND1 C:HIS318 4.4 26.0 1.0
CG C:HIS318 4.4 25.7 1.0
CB C:ASP181 4.7 26.7 1.0
CG1 C:VAL70 4.7 21.0 1.0
NE2 C:HIS66 4.8 22.0 1.0
CD C:GLU213 4.9 24.6 1.0
CB C:GLU214 5.0 25.0 1.0
OE2 C:GLU213 5.0 26.0 1.0

Zinc binding site 7 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 7 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn355

b:61.6
occ:1.00
NE2 D:HIS318 2.1 25.7 1.0
OD2 D:ASP181 2.2 29.4 1.0
OE1 D:GLU214 2.5 26.8 1.0
OE2 D:GLU214 2.6 26.1 1.0
CD D:GLU214 2.9 25.4 1.0
CE1 D:HIS318 3.1 26.0 1.0
CD2 D:HIS318 3.1 24.6 1.0
CG D:ASP181 3.2 28.6 1.0
ZN D:ZN356 3.3 73.5 1.0
OD1 D:ASP181 3.5 29.2 1.0
OE1 D:GLU213 4.1 28.8 1.0
ND1 D:HIS318 4.2 25.4 1.0
CG D:HIS318 4.3 24.0 1.0
CG D:GLU214 4.4 25.1 1.0
CB D:ASP181 4.5 27.7 1.0
NE2 D:HIS66 4.8 25.2 1.0
CG1 D:VAL70 4.8 22.3 1.0
CE1 D:HIS66 4.9 25.6 1.0
CD D:GLU213 5.0 27.6 1.0
OE2 D:GLU213 5.0 29.3 1.0

Zinc binding site 8 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 8 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn356

b:73.5
occ:1.00
OD1 D:ASP181 2.4 29.2 1.0
OD2 D:ASP236 2.6 28.5 1.0
CE1 D:HIS66 2.8 25.6 1.0
OD1 D:ASP236 3.1 29.1 1.0
CG D:ASP236 3.1 28.0 1.0
CG D:ASP181 3.3 28.6 1.0
ZN D:ZN355 3.3 61.6 1.0
OD2 D:ASP181 3.5 29.4 1.0
OE1 D:GLU213 3.6 28.8 1.0
NE2 D:HIS66 3.6 25.2 1.0
ND1 D:HIS66 3.8 25.4 1.0
OE2 D:GLU213 3.8 29.3 1.0
CD D:GLU213 3.8 27.6 1.0
OE1 D:GLU214 4.0 26.8 1.0
O D:CYS237 4.1 27.2 1.0
CB D:ASP236 4.5 27.0 1.0
CB D:ASP181 4.6 27.7 1.0
CB D:ASN182 4.6 27.9 1.0
CD D:GLU214 4.8 25.4 1.0
CD2 D:HIS66 4.8 25.1 1.0
CG D:GLU213 4.9 25.8 1.0
CG D:HIS66 4.9 25.2 1.0
CG D:ASN182 5.0 28.5 1.0

Zinc binding site 9 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 9 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn355

b:63.2
occ:1.00
OE2 E:GLU214 2.2 27.0 1.0
OD2 E:ASP181 2.3 29.4 1.0
NE2 E:HIS318 2.3 23.3 1.0
OE1 E:GLU214 2.9 29.9 1.0
CD E:GLU214 2.9 28.0 1.0
CG E:ASP181 3.2 27.9 1.0
CE1 E:HIS318 3.2 23.7 1.0
CD2 E:HIS318 3.3 23.4 1.0
OD1 E:ASP181 3.3 30.3 1.0
ZN E:ZN356 3.4 75.4 1.0
OE1 E:GLU213 4.0 29.7 1.0
CG E:GLU214 4.3 26.9 1.0
ND1 E:HIS318 4.4 23.6 1.0
CG E:HIS318 4.4 23.7 1.0
CB E:ASP181 4.5 26.4 1.0
CG1 E:VAL70 4.6 22.5 1.0
OE2 E:GLU213 4.6 30.9 1.0
CD E:GLU213 4.7 29.9 1.0
NE2 E:HIS66 4.8 20.9 1.0
CE1 E:HIS66 4.8 21.2 1.0
CB E:GLU214 5.0 26.5 1.0

Zinc binding site 10 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 10 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn356

b:75.4
occ:1.00
OD1 E:ASP181 2.2 30.3 1.0
OD2 E:ASP236 2.5 26.1 1.0
OD1 E:ASP236 2.7 27.8 1.0
CE1 E:HIS66 2.7 21.2 1.0
CG E:ASP236 2.9 26.1 1.0
CG E:ASP181 3.2 27.9 1.0
ZN E:ZN355 3.4 63.2 1.0
OE2 E:GLU213 3.4 30.9 1.0
NE2 E:HIS66 3.6 20.9 1.0
OD2 E:ASP181 3.7 29.4 1.0
OE1 E:GLU213 3.7 29.7 1.0
CD E:GLU213 3.7 29.9 1.0
ND1 E:HIS66 3.7 20.0 1.0
O E:CYS237 4.2 25.8 1.0
OE1 E:GLU214 4.4 29.9 1.0
CB E:ASN182 4.4 26.1 1.0
CB E:ASP236 4.4 25.4 1.0
CB E:ASP181 4.5 26.4 1.0
OE2 E:GLU214 4.7 27.0 1.0
CD E:GLU214 4.7 28.0 1.0
CG E:GLU213 4.8 28.1 1.0
CG E:ASN182 4.8 26.8 1.0
CD2 E:HIS66 4.8 20.9 1.0
CG E:HIS66 4.9 21.1 1.0

Zinc binding site 11 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 11 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 11 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn355

b:73.7
occ:1.00
OD1 F:ASP181 2.2 30.8 1.0
OD2 F:ASP236 2.5 29.1 1.0
OD1 F:ASP236 2.6 28.9 1.0
CE1 F:HIS66 2.7 26.2 1.0
CG F:ASP236 2.9 27.7 1.0
CG F:ASP181 3.2 29.1 1.0
ZN F:ZN356 3.2 63.6 1.0
OE1 F:GLU213 3.3 27.2 1.0
OE2 F:GLU213 3.5 28.1 1.0
CD F:GLU213 3.5 27.0 1.0
NE2 F:HIS66 3.6 26.4 1.0
OD2 F:ASP181 3.6 30.0 1.0
ND1 F:HIS66 3.6 26.1 1.0
CB F:ASN182 4.4 27.2 1.0
CB F:ASP236 4.4 26.6 1.0
O F:CYS237 4.4 26.4 1.0
OE2 F:GLU214 4.4 26.1 1.0
CB F:ASP181 4.5 27.7 1.0
CG F:GLU213 4.6 25.4 1.0
CD F:GLU214 4.7 26.2 1.0
OE1 F:GLU214 4.7 27.9 1.0
CD2 F:HIS66 4.7 26.1 1.0
CG F:HIS66 4.8 25.9 1.0
CG F:ASN182 4.9 27.9 1.0
N F:CYS237 5.0 26.4 1.0

Zinc binding site 12 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 12 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 12 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn356

b:63.6
occ:1.00
OE2 F:GLU214 2.0 26.1 1.0
NE2 F:HIS318 2.2 26.3 1.0
OD2 F:ASP181 2.3 30.0 1.0
CD F:GLU214 2.7 26.2 1.0
OE1 F:GLU214 2.9 27.9 1.0
CE1 F:HIS318 3.1 26.1 1.0
CD2 F:HIS318 3.2 25.3 1.0
CG F:ASP181 3.2 29.1 1.0
ZN F:ZN355 3.2 73.7 1.0
OD1 F:ASP181 3.5 30.8 1.0
OE1 F:GLU213 3.9 27.2 1.0
CG F:GLU214 4.1 24.6 1.0
ND1 F:HIS318 4.3 25.5 1.0
CG F:HIS318 4.3 25.4 1.0
CB F:ASP181 4.6 27.7 1.0
CG1 F:VAL70 4.6 22.0 1.0
CE1 F:HIS66 4.8 26.2 1.0
NE2 F:HIS66 4.8 26.4 1.0
CB F:GLU214 4.8 24.1 1.0
CD F:GLU213 4.8 27.0 1.0
OE2 F:GLU213 4.9 28.1 1.0
CA F:GLU214 4.9 24.0 1.0

Zinc binding site 13 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 13 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 13 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn355

b:81.3
occ:1.00
OD1 G:ASP181 2.4 31.0 1.0
OD1 G:ASP236 2.4 29.1 1.0
OD2 G:ASP236 2.4 27.6 1.0
CG G:ASP236 2.7 27.3 1.0
CE1 G:HIS66 2.9 25.7 1.0
CG G:ASP181 3.1 29.2 1.0
ZN G:ZN356 3.3 65.2 1.0
OD2 G:ASP181 3.5 29.1 1.0
NE2 G:HIS66 3.7 25.6 1.0
OE1 G:GLU213 3.8 26.8 1.0
O G:CYS237 3.8 27.2 1.0
ND1 G:HIS66 3.9 25.2 1.0
OE2 G:GLU213 4.0 26.6 1.0
CD G:GLU213 4.0 26.3 1.0
CB G:ASP236 4.2 27.0 1.0
CB G:ASP181 4.2 28.3 1.0
OE1 G:GLU214 4.3 28.0 1.0
CB G:ASN182 4.4 28.1 1.0
CG G:ASN182 4.7 28.7 1.0
O G:HOH536 4.8 12.9 1.0
N G:CYS237 4.8 27.0 1.0
OE2 G:GLU214 4.8 27.5 1.0
CD G:GLU214 4.8 27.0 1.0
CA G:ASP181 4.9 28.1 1.0
CD2 G:HIS66 4.9 25.1 1.0
CG G:GLU213 5.0 25.9 1.0
C G:CYS237 5.0 27.0 1.0
OD1 G:ASN182 5.0 30.1 1.0

Zinc binding site 14 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 14 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 14 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn356

b:65.2
occ:1.00
OE2 G:GLU214 2.1 27.5 1.0
NE2 G:HIS318 2.3 23.8 1.0
OE1 G:GLU214 2.4 28.0 1.0
OD2 G:ASP181 2.4 29.1 1.0
CD G:GLU214 2.6 27.0 1.0
CE1 G:HIS318 3.2 24.4 1.0
CG G:ASP181 3.3 29.2 1.0
CD2 G:HIS318 3.3 23.7 1.0
ZN G:ZN355 3.3 81.3 1.0
OD1 G:ASP181 3.3 31.0 1.0
OE1 G:GLU213 3.8 26.8 1.0
CG G:GLU214 4.1 25.5 1.0
ND1 G:HIS318 4.4 24.2 1.0
O G:HOH374 4.4 19.8 1.0
CG G:HIS318 4.4 23.5 1.0
NE2 G:HIS66 4.7 25.6 1.0
CB G:ASP181 4.7 28.3 1.0
CD G:GLU213 4.7 26.3 1.0
CE1 G:HIS66 4.8 25.7 1.0
CG1 G:VAL70 4.8 21.6 1.0
CB G:GLU214 4.9 24.7 1.0
OE2 G:GLU213 5.0 26.6 1.0

Zinc binding site 15 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 15 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 15 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn355

b:79.0
occ:1.00
OD1 H:ASP236 2.4 30.9 1.0
OD1 H:ASP181 2.4 32.5 1.0
OD2 H:ASP236 2.7 29.6 1.0
CE1 H:HIS66 2.8 26.2 1.0
CG H:ASP236 2.9 30.1 1.0
ZN H:ZN356 3.2 70.5 1.0
CG H:ASP181 3.3 31.5 1.0
OE1 H:GLU213 3.4 26.8 1.0
NE2 H:HIS66 3.4 26.6 1.0
OE2 H:GLU213 3.5 29.0 1.0
CD H:GLU213 3.6 27.6 1.0
OD2 H:ASP181 3.6 32.1 1.0
ND1 H:HIS66 3.9 25.7 1.0
OE1 H:GLU214 4.2 27.1 1.0
O H:CYS237 4.3 29.8 1.0
CB H:ASP236 4.4 29.7 1.0
CB H:ASP181 4.5 30.6 1.0
CB H:ASN182 4.6 30.6 1.0
CD2 H:HIS66 4.7 25.5 1.0
CD H:GLU214 4.7 26.1 1.0
CG H:GLU213 4.7 26.8 1.0
OE2 H:GLU214 4.8 26.2 1.0
O H:HOH480 4.8 20.4 1.0
CG H:HIS66 4.9 25.1 1.0
CG H:ASN182 4.9 30.6 1.0
OD1 H:ASN182 5.0 30.5 1.0

Zinc binding site 16 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 16 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 16 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn356

b:70.5
occ:1.00
OE2 H:GLU214 2.2 26.2 1.0
NE2 H:HIS318 2.2 27.7 1.0
OD2 H:ASP181 2.5 32.1 1.0
OE1 H:GLU214 2.6 27.1 1.0
CD H:GLU214 2.7 26.1 1.0
CE1 H:HIS318 3.0 27.8 1.0
ZN H:ZN355 3.2 79.0 1.0
CG H:ASP181 3.4 31.5 1.0
CD2 H:HIS318 3.4 26.8 1.0
OD1 H:ASP181 3.5 32.5 1.0
OE1 H:GLU213 3.8 26.8 1.0
ND1 H:HIS318 4.2 27.4 1.0
CG H:GLU214 4.2 25.4 1.0
CG H:HIS318 4.4 26.3 1.0
OE2 H:GLU213 4.6 29.0 1.0
CD H:GLU213 4.6 27.6 1.0
CB H:ASP181 4.8 30.6 1.0
NE2 H:HIS66 4.8 26.6 1.0
CG1 H:VAL70 4.8 22.5 1.0
CB H:GLU214 4.9 25.8 1.0
CA H:GLU214 4.9 25.9 1.0

Zinc binding site 17 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 17 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 17 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn355

b:63.3
occ:1.00
OD1 I:ASP181 2.0 32.4 1.0
CE1 I:HIS66 2.5 25.7 1.0
OD2 I:ASP236 2.6 29.5 1.0
OD1 I:ASP236 2.6 29.7 1.0
CG I:ASP236 3.0 28.7 1.0
CG I:ASP181 3.1 31.1 1.0
NE2 I:HIS66 3.3 26.1 1.0
OE2 I:GLU213 3.4 26.8 1.0
ZN I:ZN356 3.4 69.1 1.0
OE1 I:GLU213 3.5 25.7 1.0
ND1 I:HIS66 3.6 25.1 1.0
CD I:GLU213 3.6 26.2 1.0
OD2 I:ASP181 3.7 31.9 1.0
CB I:ASN182 4.1 29.2 1.0
OE1 I:GLU214 4.1 30.7 1.0
CB I:ASP181 4.3 30.0 1.0
CB I:ASP236 4.5 27.8 1.0
O I:CYS237 4.5 27.3 1.0
CG I:ASN182 4.5 29.7 1.0
CD2 I:HIS66 4.5 25.1 1.0
CG I:HIS66 4.7 25.1 1.0
CG I:GLU213 4.7 25.4 1.0
CD I:GLU214 4.8 29.4 1.0
OD1 I:ASN182 4.8 30.2 1.0
CA I:ASP181 4.8 29.9 1.0
OE2 I:GLU214 5.0 29.6 1.0

Zinc binding site 18 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 18 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 18 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn356

b:69.1
occ:1.00
NE2 I:HIS318 2.3 30.1 1.0
OD2 I:ASP181 2.4 31.9 1.0
OE2 I:GLU214 2.5 29.6 1.0
OE1 I:GLU214 2.7 30.7 1.0
CD I:GLU214 2.9 29.4 1.0
CG I:ASP181 3.2 31.1 1.0
CE1 I:HIS318 3.2 30.1 1.0
CD2 I:HIS318 3.3 28.7 1.0
OD1 I:ASP181 3.3 32.4 1.0
ZN I:ZN355 3.4 63.3 1.0
OE1 I:GLU213 3.9 25.7 1.0
ND1 I:HIS318 4.4 29.2 1.0
CG I:GLU214 4.4 27.7 1.0
CG I:HIS318 4.4 27.7 1.0
CB I:ASP181 4.6 30.0 1.0
OE2 I:GLU213 4.8 26.8 1.0
CD I:GLU213 4.8 26.2 1.0
CG1 I:VAL70 4.8 23.4 1.0
NE2 I:HIS66 4.9 26.1 1.0
CE1 I:HIS66 5.0 25.7 1.0

Zinc binding site 19 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 19 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 19 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn355

b:67.2
occ:1.00
OD1 J:ASP181 2.4 29.7 1.0
OD2 J:ASP236 2.4 27.4 1.0
CE1 J:HIS66 2.5 23.9 1.0
OD1 J:ASP236 2.6 29.4 1.0
CG J:ASP236 2.8 28.1 1.0
CG J:ASP181 3.2 29.5 1.0
NE2 J:HIS66 3.3 23.9 1.0
ZN J:ZN356 3.4 68.2 1.0
OD2 J:ASP181 3.5 31.4 1.0
OE2 J:GLU213 3.5 26.3 1.0
ND1 J:HIS66 3.6 23.9 1.0
OE1 J:GLU213 3.6 25.9 1.0
CD J:GLU213 3.6 26.0 1.0
CB J:ASN182 4.2 28.1 1.0
OE1 J:GLU214 4.3 28.9 1.0
O J:CYS237 4.3 27.8 1.0
CB J:ASP236 4.4 27.7 1.0
CB J:ASP181 4.4 28.5 1.0
CD2 J:HIS66 4.6 24.1 1.0
CG J:ASN182 4.6 28.0 1.0
OE2 J:GLU214 4.6 27.9 1.0
CG J:GLU213 4.7 24.9 1.0
CD J:GLU214 4.7 27.4 1.0
CG J:HIS66 4.7 24.2 1.0
OD1 J:ASN182 4.8 27.6 1.0
N J:CYS237 4.9 27.9 1.0
CA J:ASP181 5.0 28.4 1.0

Zinc binding site 20 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 20 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 20 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn356

b:68.2
occ:1.00
NE2 J:HIS318 2.2 27.6 1.0
OE2 J:GLU214 2.3 27.9 1.0
OD2 J:ASP181 2.3 31.4 1.0
OE1 J:GLU214 2.8 28.9 1.0
CD J:GLU214 2.9 27.4 1.0
CE1 J:HIS318 3.2 26.9 1.0
CD2 J:HIS318 3.2 26.4 1.0
CG J:ASP181 3.3 29.5 1.0
ZN J:ZN355 3.4 67.2 1.0
OD1 J:ASP181 3.6 29.7 1.0
OE1 J:GLU213 3.9 25.9 1.0
ND1 J:HIS318 4.3 26.1 1.0
CG J:GLU214 4.4 25.7 1.0
CG J:HIS318 4.4 24.6 1.0
OE2 J:GLU213 4.6 26.3 1.0
CB J:ASP181 4.6 28.5 1.0
CD J:GLU213 4.6 26.0 1.0
CG1 J:VAL70 4.8 20.5 1.0
NE2 J:HIS66 4.9 23.9 1.0
CE1 J:HIS66 4.9 23.9 1.0
CG2 J:ILE317 5.0 23.3 1.0

Zinc binding site 21 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 21 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 21 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn355

b:69.3
occ:1.00
OE2 K:GLU214 2.2 26.8 1.0
NE2 K:HIS318 2.3 27.6 1.0
OD2 K:ASP181 2.4 29.1 1.0
OE1 K:GLU214 2.7 27.0 1.0
CD K:GLU214 2.8 26.4 1.0
ZN K:ZN356 3.1 65.5 1.0
CG K:ASP181 3.2 27.4 1.0
CD2 K:HIS318 3.2 26.0 1.0
CE1 K:HIS318 3.3 26.6 1.0
OD1 K:ASP181 3.3 29.0 1.0
OE1 K:GLU213 3.9 25.6 1.0
CG K:GLU214 4.3 24.6 1.0
CG K:HIS318 4.4 24.5 1.0
ND1 K:HIS318 4.4 25.4 1.0
O K:HOH366 4.6 8.7 1.0
CB K:ASP181 4.6 25.9 1.0
NE2 K:HIS66 4.7 23.8 1.0
CD K:GLU213 4.8 24.9 1.0
CE1 K:HIS66 4.8 24.1 1.0
OE2 K:GLU213 4.9 24.9 1.0
CG1 K:VAL70 4.9 22.1 1.0
CB K:GLU214 5.0 23.9 1.0

Zinc binding site 22 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 22 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 22 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn356

b:65.5
occ:1.00
OD1 K:ASP181 2.3 29.0 1.0
OD1 K:ASP236 2.4 29.6 1.0
OD2 K:ASP236 2.6 28.0 1.0
CE1 K:HIS66 2.7 24.1 1.0
CG K:ASP236 2.8 27.3 1.0
ZN K:ZN355 3.1 69.3 1.0
CG K:ASP181 3.3 27.4 1.0
NE2 K:HIS66 3.4 23.8 1.0
OE1 K:GLU213 3.5 25.6 1.0
OD2 K:ASP181 3.6 29.1 1.0
OE2 K:GLU213 3.7 24.9 1.0
CD K:GLU213 3.8 24.9 1.0
ND1 K:HIS66 3.8 23.8 1.0
O K:CYS237 4.1 26.0 1.0
OE1 K:GLU214 4.2 27.0 1.0
CB K:ASP236 4.3 26.0 1.0
OE2 K:GLU214 4.4 26.8 1.0
CD K:GLU214 4.5 26.4 1.0
CB K:ASN182 4.5 25.7 1.0
CB K:ASP181 4.5 25.9 1.0
CD2 K:HIS66 4.7 23.5 1.0
CG K:ASN182 4.8 26.0 1.0
CG K:GLU213 4.9 24.0 1.0
CG K:HIS66 4.9 23.2 1.0
OD1 K:ASN182 4.9 27.0 1.0
N K:CYS237 5.0 26.0 1.0

Zinc binding site 23 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 23 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 23 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn355

b:73.2
occ:1.00
OD1 L:ASP181 2.3 32.2 1.0
OD1 L:ASP236 2.5 31.5 1.0
OD2 L:ASP236 2.5 31.8 1.0
CE1 L:HIS66 2.5 28.4 1.0
CG L:ASP236 2.8 30.6 1.0
ZN L:ZN356 3.2 74.6 1.0
CG L:ASP181 3.2 32.3 1.0
NE2 L:HIS66 3.3 27.9 1.0
OE2 L:GLU213 3.5 31.0 1.0
OE1 L:GLU213 3.5 30.5 1.0
ND1 L:HIS66 3.6 27.1 1.0
OD2 L:ASP181 3.6 32.9 1.0
CD L:GLU213 3.7 30.1 1.0
OE1 L:GLU214 4.2 27.2 1.0
O L:CYS237 4.3 28.4 1.0
CB L:ASN182 4.3 32.5 1.0
CB L:ASP236 4.3 29.7 1.0
CB L:ASP181 4.5 32.1 1.0
CD2 L:HIS66 4.5 26.7 1.0
CG L:ASN182 4.6 32.6 1.0
CD L:GLU214 4.7 27.0 1.0
CG L:HIS66 4.7 27.3 1.0
OE2 L:GLU214 4.7 27.9 1.0
O L:HOH404 4.8 38.8 1.0
CG L:GLU213 4.9 28.1 1.0
OD1 L:ASN182 5.0 32.1 1.0

Zinc binding site 24 out of 24 in 3kl9

Go back to Zinc Binding Sites List in 3kl9
Zinc binding site 24 out of 24 in the Crystal Structure of Pepa From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 24 of Crystal Structure of Pepa From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn356

b:74.6
occ:1.00
NE2 L:HIS318 2.2 27.6 1.0
OD2 L:ASP181 2.3 32.9 1.0
OE1 L:GLU214 2.4 27.2 1.0
OE2 L:GLU214 2.5 27.9 1.0
CD L:GLU214 2.8 27.0 1.0
CD2 L:HIS318 3.1 27.4 1.0
CG L:ASP181 3.1 32.3 1.0
CE1 L:HIS318 3.2 27.8 1.0
ZN L:ZN355 3.2 73.2 1.0
OD1 L:ASP181 3.3 32.2 1.0
OE1 L:GLU213 4.1 30.5 1.0
ND1 L:HIS318 4.3 27.8 1.0
CG L:HIS318 4.3 27.2 1.0
CG L:GLU214 4.3 26.9 1.0
CB L:ASP181 4.6 32.1 1.0
NE2 L:HIS66 4.7 27.9 1.0
CG1 L:VAL70 4.8 23.6 1.0
CE1 L:HIS66 4.8 28.4 1.0
OE2 L:GLU213 4.9 31.0 1.0
CD L:GLU213 4.9 30.1 1.0

Reference:

D.Kim, B.H.San, S.H.Moh, H.J.Park, D.Y.Kim, S.Lee, K.K.Kim. Structural Basis For the Substrate Specificity of Pepa From Streptococcus Pneumoniae, A Dodecameric Tetrahedral Protease Biochem.Biophys.Res.Commun. V. 391 431 2010.
ISSN: ISSN 0006-291X
PubMed: 19914209
DOI: 10.1016/J.BBRC.2009.11.075
Page generated: Sat Sep 26 11:11:15 2020
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy