Zinc in PDB 3kh3: Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit
Enzymatic activity of Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit
All present enzymatic activity of Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit:
1.15.1.1;
Protein crystallography data
The structure of Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit, PDB code: 3kh3
was solved by
E.M.Gazdag,
W.Blankenfeldt,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.78 /
3.50
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
75.500,
166.610,
174.980,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
24.3 /
27.7
|
Other elements in 3kh3:
The structure of Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit also contains other interesting chemical elements:
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Zinc atom in the Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit
(pdb code 3kh3). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the
Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit, PDB code: 3kh3:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 12 in 3kh3
Go back to
Zinc Binding Sites List in 3kh3
Zinc binding site 1 out
of 12 in the Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn156
b:35.1
occ:1.00
|
OD1
|
A:ASP84
|
1.9
|
50.3
|
1.0
|
ND1
|
A:HIS81
|
2.0
|
53.4
|
1.0
|
ND1
|
A:HIS64
|
2.0
|
49.0
|
1.0
|
ND1
|
A:HIS72
|
2.2
|
55.0
|
1.0
|
CG
|
A:ASP84
|
2.6
|
52.6
|
1.0
|
OD2
|
A:ASP84
|
2.7
|
55.1
|
1.0
|
CE1
|
A:HIS81
|
2.8
|
55.4
|
1.0
|
CG
|
A:HIS64
|
2.9
|
48.1
|
1.0
|
CE1
|
A:HIS64
|
2.9
|
49.2
|
1.0
|
CE1
|
A:HIS72
|
2.9
|
54.2
|
1.0
|
CG
|
A:HIS81
|
3.0
|
54.6
|
1.0
|
CB
|
A:HIS64
|
3.3
|
48.3
|
1.0
|
CG
|
A:HIS72
|
3.3
|
57.8
|
1.0
|
CB
|
A:HIS81
|
3.5
|
53.7
|
1.0
|
O
|
A:LYS137
|
3.8
|
55.5
|
1.0
|
CB
|
A:HIS72
|
3.8
|
59.8
|
1.0
|
NE2
|
A:HIS81
|
3.9
|
57.6
|
1.0
|
NE2
|
A:HIS64
|
4.0
|
48.2
|
1.0
|
CD2
|
A:HIS64
|
4.0
|
47.5
|
1.0
|
CD2
|
A:HIS81
|
4.0
|
57.2
|
1.0
|
CB
|
A:ASP84
|
4.1
|
53.0
|
1.0
|
CA
|
A:HIS72
|
4.1
|
61.2
|
1.0
|
NE2
|
A:HIS72
|
4.1
|
56.0
|
1.0
|
CD2
|
A:HIS72
|
4.3
|
58.4
|
1.0
|
CA
|
A:ASP84
|
4.6
|
50.5
|
1.0
|
CA
|
A:HIS81
|
4.7
|
56.3
|
1.0
|
CA
|
A:HIS64
|
4.8
|
46.5
|
1.0
|
N
|
A:GLY73
|
4.8
|
61.6
|
1.0
|
N
|
A:HIS81
|
4.8
|
58.8
|
1.0
|
N
|
A:ASP84
|
4.9
|
49.7
|
1.0
|
C
|
A:LYS137
|
4.9
|
57.3
|
1.0
|
|
Zinc binding site 2 out
of 12 in 3kh3
Go back to
Zinc Binding Sites List in 3kh3
Zinc binding site 2 out
of 12 in the Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn156
b:20.6
occ:1.00
|
OD1
|
B:ASP84
|
1.7
|
35.1
|
1.0
|
ND1
|
B:HIS64
|
2.0
|
36.1
|
1.0
|
ND1
|
B:HIS72
|
2.0
|
37.7
|
1.0
|
ND1
|
B:HIS81
|
2.1
|
40.5
|
1.0
|
CG
|
B:ASP84
|
2.5
|
36.0
|
1.0
|
OD2
|
B:ASP84
|
2.6
|
37.9
|
1.0
|
CE1
|
B:HIS72
|
2.8
|
36.1
|
1.0
|
CE1
|
B:HIS64
|
2.9
|
35.8
|
1.0
|
CE1
|
B:HIS81
|
3.0
|
42.4
|
1.0
|
CG
|
B:HIS64
|
3.0
|
37.1
|
1.0
|
CG
|
B:HIS81
|
3.1
|
41.7
|
1.0
|
CG
|
B:HIS72
|
3.2
|
39.3
|
1.0
|
CB
|
B:HIS64
|
3.4
|
38.5
|
1.0
|
CB
|
B:HIS81
|
3.5
|
40.6
|
1.0
|
CB
|
B:HIS72
|
3.8
|
41.9
|
1.0
|
O
|
B:LYS137
|
3.8
|
41.9
|
1.0
|
CB
|
B:ASP84
|
3.9
|
35.4
|
1.0
|
NE2
|
B:HIS64
|
4.0
|
36.1
|
1.0
|
NE2
|
B:HIS72
|
4.0
|
36.1
|
1.0
|
CD2
|
B:HIS64
|
4.0
|
37.0
|
1.0
|
NE2
|
B:HIS81
|
4.1
|
44.7
|
1.0
|
CA
|
B:HIS72
|
4.1
|
43.0
|
1.0
|
CD2
|
B:HIS81
|
4.2
|
44.4
|
1.0
|
CD2
|
B:HIS72
|
4.2
|
38.4
|
1.0
|
CA
|
B:ASP84
|
4.5
|
34.1
|
1.0
|
N
|
B:GLY73
|
4.7
|
40.7
|
1.0
|
CA
|
B:HIS81
|
4.7
|
42.2
|
1.0
|
N
|
B:HIS81
|
4.8
|
42.5
|
1.0
|
N
|
B:ASP84
|
4.8
|
35.1
|
1.0
|
CA
|
B:HIS64
|
4.9
|
38.6
|
1.0
|
CD2
|
B:HIS47
|
4.9
|
32.0
|
1.0
|
C
|
B:LYS137
|
5.0
|
43.2
|
1.0
|
|
Zinc binding site 3 out
of 12 in 3kh3
Go back to
Zinc Binding Sites List in 3kh3
Zinc binding site 3 out
of 12 in the Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn156
b:33.0
occ:1.00
|
OD1
|
C:ASP84
|
1.8
|
48.1
|
1.0
|
ND1
|
C:HIS72
|
2.0
|
48.5
|
1.0
|
ND1
|
C:HIS81
|
2.0
|
51.5
|
1.0
|
ND1
|
C:HIS64
|
2.2
|
52.7
|
1.0
|
CG
|
C:ASP84
|
2.5
|
47.2
|
1.0
|
OD2
|
C:ASP84
|
2.5
|
47.0
|
1.0
|
CE1
|
C:HIS72
|
2.8
|
47.9
|
1.0
|
CE1
|
C:HIS81
|
2.9
|
52.9
|
1.0
|
CG
|
C:HIS81
|
3.0
|
51.5
|
1.0
|
CE1
|
C:HIS64
|
3.0
|
53.4
|
1.0
|
CG
|
C:HIS64
|
3.1
|
55.5
|
1.0
|
CG
|
C:HIS72
|
3.1
|
48.8
|
1.0
|
CB
|
C:HIS81
|
3.5
|
51.0
|
1.0
|
CB
|
C:HIS64
|
3.5
|
56.3
|
1.0
|
CB
|
C:HIS72
|
3.6
|
50.1
|
1.0
|
O
|
C:LYS137
|
3.8
|
55.4
|
1.0
|
CA
|
C:HIS72
|
3.9
|
49.4
|
1.0
|
CB
|
C:ASP84
|
3.9
|
47.0
|
1.0
|
NE2
|
C:HIS81
|
4.0
|
53.5
|
1.0
|
NE2
|
C:HIS72
|
4.0
|
47.1
|
1.0
|
CD2
|
C:HIS81
|
4.1
|
52.6
|
1.0
|
NE2
|
C:HIS64
|
4.1
|
56.4
|
1.0
|
CD2
|
C:HIS72
|
4.2
|
48.0
|
1.0
|
CD2
|
C:HIS64
|
4.2
|
57.8
|
1.0
|
CA
|
C:ASP84
|
4.6
|
48.4
|
1.0
|
N
|
C:GLY73
|
4.6
|
46.5
|
1.0
|
N
|
C:HIS81
|
4.7
|
49.3
|
1.0
|
CA
|
C:HIS81
|
4.7
|
50.7
|
1.0
|
C
|
C:HIS72
|
4.9
|
47.9
|
1.0
|
N
|
C:ASP84
|
4.9
|
49.9
|
1.0
|
C
|
C:LYS137
|
4.9
|
57.1
|
1.0
|
N
|
C:HIS72
|
5.0
|
51.4
|
1.0
|
CA
|
C:HIS64
|
5.0
|
59.3
|
1.0
|
|
Zinc binding site 4 out
of 12 in 3kh3
Go back to
Zinc Binding Sites List in 3kh3
Zinc binding site 4 out
of 12 in the Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn156
b:0.2
occ:1.00
|
ND1
|
D:HIS81
|
2.4
|
0.9
|
1.0
|
OD1
|
D:ASP84
|
2.5
|
0.0
|
1.0
|
OD2
|
D:ASP84
|
2.8
|
0.6
|
1.0
|
ND1
|
D:HIS72
|
2.9
|
0.1
|
1.0
|
CG
|
D:ASP84
|
3.0
|
0.9
|
1.0
|
CG
|
D:HIS81
|
3.1
|
0.1
|
1.0
|
CE1
|
D:HIS81
|
3.1
|
0.3
|
1.0
|
CB
|
D:HIS72
|
3.2
|
0.0
|
1.0
|
CG
|
D:HIS72
|
3.4
|
0.1
|
1.0
|
CA
|
D:HIS72
|
3.5
|
0.2
|
1.0
|
CB
|
D:HIS81
|
3.5
|
0.4
|
1.0
|
CB
|
D:HIS64
|
3.6
|
0.2
|
1.0
|
ND1
|
D:HIS64
|
3.6
|
0.1
|
1.0
|
CG
|
D:HIS64
|
3.8
|
0.5
|
1.0
|
NE2
|
D:HIS81
|
4.0
|
0.2
|
1.0
|
CD2
|
D:HIS81
|
4.0
|
0.6
|
1.0
|
CE1
|
D:HIS72
|
4.0
|
0.4
|
1.0
|
N
|
D:HIS72
|
4.3
|
0.6
|
1.0
|
O
|
D:LYS137
|
4.3
|
1.0
|
1.0
|
CB
|
D:ASP84
|
4.4
|
0.5
|
1.0
|
N
|
D:HIS81
|
4.5
|
0.8
|
1.0
|
CD2
|
D:HIS47
|
4.5
|
0.4
|
1.0
|
CE1
|
D:HIS64
|
4.6
|
0.2
|
1.0
|
CA
|
D:HIS81
|
4.6
|
0.9
|
1.0
|
CD2
|
D:HIS72
|
4.6
|
0.2
|
1.0
|
C
|
D:HIS72
|
4.7
|
0.6
|
1.0
|
N
|
D:GLY73
|
4.7
|
0.9
|
1.0
|
CD2
|
D:HIS64
|
4.9
|
0.7
|
1.0
|
NE2
|
D:HIS47
|
4.9
|
0.8
|
1.0
|
NE2
|
D:HIS72
|
4.9
|
1.0
|
1.0
|
|
Zinc binding site 5 out
of 12 in 3kh3
Go back to
Zinc Binding Sites List in 3kh3
Zinc binding site 5 out
of 12 in the Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn156
b:0.3
occ:1.00
|
OD1
|
E:ASP84
|
1.7
|
0.2
|
1.0
|
ND1
|
E:HIS81
|
1.9
|
0.9
|
1.0
|
OD2
|
E:ASP84
|
2.1
|
0.0
|
1.0
|
CG
|
E:ASP84
|
2.1
|
0.4
|
1.0
|
ND1
|
E:HIS72
|
2.4
|
0.8
|
1.0
|
CG
|
E:HIS81
|
2.6
|
0.8
|
1.0
|
ND1
|
E:HIS64
|
2.6
|
0.4
|
1.0
|
CB
|
E:HIS81
|
2.8
|
0.0
|
1.0
|
CE1
|
E:HIS81
|
2.9
|
0.0
|
1.0
|
CE1
|
E:HIS72
|
3.2
|
0.2
|
1.0
|
CG
|
E:HIS64
|
3.5
|
0.7
|
1.0
|
CG
|
E:HIS72
|
3.5
|
0.5
|
1.0
|
CB
|
E:ASP84
|
3.6
|
0.2
|
1.0
|
CB
|
E:HIS64
|
3.6
|
0.3
|
1.0
|
CE1
|
E:HIS64
|
3.6
|
0.7
|
1.0
|
CD2
|
E:HIS81
|
3.7
|
0.2
|
1.0
|
NE2
|
E:HIS81
|
3.9
|
0.5
|
1.0
|
CB
|
E:HIS72
|
3.9
|
0.7
|
1.0
|
CA
|
E:HIS72
|
3.9
|
0.0
|
1.0
|
CA
|
E:HIS81
|
4.0
|
0.4
|
1.0
|
N
|
E:HIS81
|
4.0
|
0.9
|
1.0
|
O
|
E:LYS137
|
4.2
|
0.5
|
1.0
|
CA
|
E:ASP84
|
4.2
|
0.6
|
1.0
|
NE2
|
E:HIS72
|
4.4
|
0.1
|
1.0
|
N
|
E:ASP84
|
4.4
|
0.2
|
1.0
|
N
|
E:GLY73
|
4.5
|
0.7
|
1.0
|
CD2
|
E:HIS72
|
4.5
|
0.3
|
1.0
|
CD2
|
E:HIS64
|
4.6
|
0.7
|
1.0
|
NE2
|
E:HIS64
|
4.7
|
0.3
|
1.0
|
C
|
E:HIS72
|
4.8
|
0.8
|
1.0
|
C
|
E:HIS81
|
4.8
|
0.7
|
1.0
|
O
|
E:HIS81
|
4.9
|
0.8
|
1.0
|
N
|
E:HIS72
|
4.9
|
0.5
|
1.0
|
O
|
E:GLY73
|
5.0
|
0.1
|
1.0
|
|
Zinc binding site 6 out
of 12 in 3kh3
Go back to
Zinc Binding Sites List in 3kh3
Zinc binding site 6 out
of 12 in the Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Zn156
b:23.1
occ:1.00
|
ND1
|
F:HIS72
|
1.8
|
39.0
|
1.0
|
OD1
|
F:ASP84
|
1.9
|
38.1
|
1.0
|
ND1
|
F:HIS81
|
2.1
|
42.7
|
1.0
|
ND1
|
F:HIS64
|
2.2
|
39.9
|
1.0
|
OD2
|
F:ASP84
|
2.5
|
39.7
|
1.0
|
CG
|
F:ASP84
|
2.6
|
38.6
|
1.0
|
CE1
|
F:HIS72
|
2.7
|
37.8
|
1.0
|
CE1
|
F:HIS81
|
2.9
|
44.1
|
1.0
|
CE1
|
F:HIS64
|
3.0
|
39.4
|
1.0
|
CG
|
F:HIS72
|
3.0
|
40.0
|
1.0
|
CG
|
F:HIS64
|
3.1
|
41.8
|
1.0
|
CG
|
F:HIS81
|
3.1
|
43.9
|
1.0
|
CB
|
F:HIS72
|
3.5
|
42.2
|
1.0
|
CB
|
F:HIS64
|
3.5
|
43.4
|
1.0
|
CB
|
F:HIS81
|
3.6
|
43.3
|
1.0
|
O
|
F:LYS137
|
3.7
|
43.5
|
1.0
|
NE2
|
F:HIS72
|
3.8
|
37.3
|
1.0
|
CA
|
F:HIS72
|
3.9
|
43.1
|
1.0
|
NE2
|
F:HIS81
|
4.0
|
46.1
|
1.0
|
CD2
|
F:HIS72
|
4.0
|
38.8
|
1.0
|
NE2
|
F:HIS64
|
4.0
|
40.5
|
1.0
|
CB
|
F:ASP84
|
4.0
|
38.4
|
1.0
|
CD2
|
F:HIS81
|
4.1
|
46.0
|
1.0
|
CD2
|
F:HIS64
|
4.1
|
42.0
|
1.0
|
N
|
F:GLY73
|
4.6
|
40.8
|
1.0
|
CA
|
F:ASP84
|
4.7
|
38.4
|
1.0
|
C
|
F:LYS137
|
4.8
|
44.5
|
1.0
|
N
|
F:HIS81
|
4.8
|
43.8
|
1.0
|
C
|
F:HIS72
|
4.8
|
42.5
|
1.0
|
CA
|
F:HIS81
|
4.8
|
44.4
|
1.0
|
N
|
F:HIS72
|
4.9
|
45.8
|
1.0
|
|
Zinc binding site 7 out
of 12 in 3kh3
Go back to
Zinc Binding Sites List in 3kh3
Zinc binding site 7 out
of 12 in the Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Zn156
b:68.6
occ:1.00
|
OD1
|
G:ASP84
|
1.8
|
69.3
|
1.0
|
ND1
|
G:HIS81
|
1.9
|
69.8
|
1.0
|
ND1
|
G:HIS64
|
2.1
|
67.0
|
1.0
|
ND1
|
G:HIS72
|
2.2
|
73.7
|
1.0
|
CG
|
G:ASP84
|
2.5
|
71.8
|
1.0
|
OD2
|
G:ASP84
|
2.6
|
73.7
|
1.0
|
CE1
|
G:HIS81
|
2.9
|
71.1
|
1.0
|
CG
|
G:HIS81
|
2.9
|
70.9
|
1.0
|
CG
|
G:HIS64
|
3.0
|
65.2
|
1.0
|
CE1
|
G:HIS72
|
3.0
|
73.9
|
1.0
|
CE1
|
G:HIS64
|
3.1
|
67.7
|
1.0
|
CB
|
G:HIS64
|
3.3
|
64.6
|
1.0
|
CB
|
G:HIS81
|
3.3
|
70.4
|
1.0
|
CG
|
G:HIS72
|
3.4
|
76.1
|
1.0
|
CB
|
G:HIS72
|
3.9
|
76.9
|
1.0
|
O
|
G:LYS137
|
3.9
|
71.8
|
1.0
|
NE2
|
G:HIS81
|
3.9
|
72.8
|
1.0
|
CB
|
G:ASP84
|
4.0
|
73.0
|
1.0
|
CD2
|
G:HIS81
|
4.0
|
72.6
|
1.0
|
CA
|
G:HIS72
|
4.1
|
78.2
|
1.0
|
CD2
|
G:HIS64
|
4.1
|
64.7
|
1.0
|
NE2
|
G:HIS64
|
4.1
|
66.3
|
1.0
|
NE2
|
G:HIS72
|
4.2
|
76.2
|
1.0
|
CD2
|
G:HIS72
|
4.4
|
77.9
|
1.0
|
CA
|
G:ASP84
|
4.5
|
71.0
|
1.0
|
CA
|
G:HIS81
|
4.6
|
73.1
|
1.0
|
N
|
G:HIS81
|
4.6
|
76.0
|
1.0
|
N
|
G:GLY73
|
4.7
|
80.4
|
1.0
|
CA
|
G:HIS64
|
4.8
|
62.2
|
1.0
|
N
|
G:ASP84
|
4.8
|
69.3
|
1.0
|
|
Zinc binding site 8 out
of 12 in 3kh3
Go back to
Zinc Binding Sites List in 3kh3
Zinc binding site 8 out
of 12 in the Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Zn156
b:28.7
occ:1.00
|
ND1
|
H:HIS72
|
1.9
|
45.0
|
1.0
|
OD1
|
H:ASP84
|
2.0
|
42.4
|
1.0
|
ND1
|
H:HIS81
|
2.0
|
48.2
|
1.0
|
ND1
|
H:HIS64
|
2.1
|
45.1
|
1.0
|
CG
|
H:ASP84
|
2.7
|
42.4
|
1.0
|
OD2
|
H:ASP84
|
2.8
|
43.9
|
1.0
|
CE1
|
H:HIS72
|
2.8
|
43.3
|
1.0
|
CE1
|
H:HIS81
|
2.8
|
50.5
|
1.0
|
CE1
|
H:HIS64
|
2.9
|
45.0
|
1.0
|
CG
|
H:HIS72
|
3.0
|
46.7
|
1.0
|
CG
|
H:HIS64
|
3.0
|
47.0
|
1.0
|
CG
|
H:HIS81
|
3.1
|
48.8
|
1.0
|
CB
|
H:HIS64
|
3.4
|
48.2
|
1.0
|
CB
|
H:HIS72
|
3.5
|
49.2
|
1.0
|
O
|
H:LYS137
|
3.5
|
51.4
|
1.0
|
CB
|
H:HIS81
|
3.7
|
47.1
|
1.0
|
CA
|
H:HIS72
|
3.9
|
49.4
|
1.0
|
NE2
|
H:HIS72
|
3.9
|
43.3
|
1.0
|
NE2
|
H:HIS81
|
3.9
|
52.4
|
1.0
|
NE2
|
H:HIS64
|
4.0
|
46.6
|
1.0
|
CD2
|
H:HIS64
|
4.1
|
47.8
|
1.0
|
CD2
|
H:HIS72
|
4.1
|
45.7
|
1.0
|
CD2
|
H:HIS81
|
4.1
|
51.3
|
1.0
|
CB
|
H:ASP84
|
4.2
|
41.0
|
1.0
|
N
|
H:GLY73
|
4.6
|
46.3
|
1.0
|
C
|
H:LYS137
|
4.7
|
53.2
|
1.0
|
CA
|
H:ASP84
|
4.8
|
40.0
|
1.0
|
C
|
H:HIS72
|
4.9
|
48.4
|
1.0
|
N
|
H:HIS81
|
4.9
|
47.5
|
1.0
|
CA
|
H:HIS81
|
4.9
|
47.7
|
1.0
|
N
|
H:HIS72
|
4.9
|
52.4
|
1.0
|
CA
|
H:HIS64
|
5.0
|
49.2
|
1.0
|
|
Zinc binding site 9 out
of 12 in 3kh3
Go back to
Zinc Binding Sites List in 3kh3
Zinc binding site 9 out
of 12 in the Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn156
b:39.5
occ:1.00
|
OD1
|
I:ASP84
|
1.9
|
51.3
|
1.0
|
ND1
|
I:HIS81
|
2.0
|
54.7
|
1.0
|
ND1
|
I:HIS72
|
2.0
|
55.8
|
1.0
|
ND1
|
I:HIS64
|
2.2
|
49.8
|
1.0
|
OD2
|
I:ASP84
|
2.5
|
56.1
|
1.0
|
CG
|
I:ASP84
|
2.5
|
53.6
|
1.0
|
CE1
|
I:HIS72
|
2.8
|
54.8
|
1.0
|
CE1
|
I:HIS81
|
2.8
|
56.7
|
1.0
|
CG
|
I:HIS81
|
3.0
|
56.0
|
1.0
|
CE1
|
I:HIS64
|
3.1
|
50.0
|
1.0
|
CG
|
I:HIS64
|
3.1
|
49.0
|
1.0
|
CG
|
I:HIS72
|
3.2
|
58.8
|
1.0
|
CB
|
I:HIS81
|
3.4
|
54.7
|
1.0
|
CB
|
I:HIS64
|
3.5
|
49.4
|
1.0
|
CB
|
I:HIS72
|
3.7
|
61.0
|
1.0
|
O
|
I:LYS137
|
3.7
|
56.5
|
1.0
|
NE2
|
I:HIS81
|
3.9
|
59.1
|
1.0
|
CA
|
I:HIS72
|
3.9
|
62.5
|
1.0
|
CB
|
I:ASP84
|
4.0
|
53.9
|
1.0
|
NE2
|
I:HIS72
|
4.0
|
56.5
|
1.0
|
CD2
|
I:HIS81
|
4.0
|
58.7
|
1.0
|
NE2
|
I:HIS64
|
4.1
|
49.0
|
1.0
|
CD2
|
I:HIS64
|
4.2
|
48.5
|
1.0
|
CD2
|
I:HIS72
|
4.2
|
59.2
|
1.0
|
N
|
I:GLY73
|
4.6
|
62.8
|
1.0
|
CA
|
I:ASP84
|
4.6
|
51.4
|
1.0
|
N
|
I:HIS81
|
4.7
|
59.7
|
1.0
|
CA
|
I:HIS81
|
4.7
|
57.2
|
1.0
|
C
|
I:HIS72
|
4.9
|
64.5
|
1.0
|
C
|
I:LYS137
|
4.9
|
58.4
|
1.0
|
N
|
I:ASP84
|
4.9
|
50.6
|
1.0
|
N
|
I:HIS72
|
4.9
|
65.0
|
1.0
|
CA
|
I:HIS64
|
5.0
|
47.6
|
1.0
|
|
Zinc binding site 10 out
of 12 in 3kh3
Go back to
Zinc Binding Sites List in 3kh3
Zinc binding site 10 out
of 12 in the Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Crystal Structure of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in Leishmania Tarantolae; P212121 Crystal Form Containing 12 Chains in the Asymmetric Unit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn156
b:21.9
occ:1.00
|
OD1
|
J:ASP84
|
1.8
|
36.4
|
1.0
|
ND1
|
J:HIS81
|
2.0
|
41.3
|
1.0
|
ND1
|
J:HIS72
|
2.0
|
39.4
|
1.0
|
ND1
|
J:HIS64
|
2.1
|
36.9
|
1.0
|
CG
|
J:ASP84
|
2.5
|
37.7
|
1.0
|
OD2
|
J:ASP84
|
2.6
|
39.7
|
1.0
|
CE1
|
J:HIS72
|
2.8
|
37.9
|
1.0
|
CE1
|
J:HIS81
|
2.8
|
43.2
|
1.0
|
CE1
|
J:HIS64
|
3.0
|
36.5
|
1.0
|
CG
|
J:HIS81
|
3.0
|
42.6
|
1.0
|
CG
|
J:HIS64
|
3.0
|
37.5
|
1.0
|
CG
|
J:HIS72
|
3.2
|
41.4
|
1.0
|
CB
|
J:HIS64
|
3.4
|
38.8
|
1.0
|
CB
|
J:HIS81
|
3.5
|
41.6
|
1.0
|
CB
|
J:HIS72
|
3.7
|
44.0
|
1.0
|
O
|
J:LYS137
|
3.7
|
42.8
|
1.0
|
NE2
|
J:HIS81
|
3.9
|
45.6
|
1.0
|
NE2
|
J:HIS72
|
4.0
|
38.4
|
1.0
|
CB
|
J:ASP84
|
4.0
|
37.4
|
1.0
|
CA
|
J:HIS72
|
4.0
|
45.1
|
1.0
|
NE2
|
J:HIS64
|
4.0
|
36.7
|
1.0
|
CD2
|
J:HIS81
|
4.1
|
45.3
|
1.0
|
CD2
|
J:HIS64
|
4.1
|
37.4
|
1.0
|
CD2
|
J:HIS72
|
4.2
|
40.7
|
1.0
|
CA
|
J:ASP84
|
4.6
|
35.9
|
1.0
|
N
|
J:GLY73
|
4.7
|
43.2
|
1.0
|
CA
|
J:HIS81
|
4.7
|
43.4
|
1.0
|
N
|
J:HIS81
|
4.8
|
44.1
|
1.0
|
C
|
J:LYS137
|
4.9
|
44.4
|
1.0
|
CA
|
J:HIS64
|
4.9
|
38.7
|
1.0
|
N
|
J:ASP84
|
4.9
|
36.6
|
1.0
|
C
|
J:HIS72
|
4.9
|
45.1
|
1.0
|
|
Reference:
E.M.Gazdag,
I.C.Cirstea,
R.Breitling,
J.Lukes,
W.Blankenfeldt,
K.Alexandrov.
Purification and Crystallization of Human Cu/Zn Superoxide Dismutase Recombinantly Produced in the Protozoan Leishmania Tarentolae. Acta Crystallogr.,Sect.F V. 66 871 2010.
ISSN: ESSN 1744-3091
PubMed: 20693657
DOI: 10.1107/S1744309110019330
Page generated: Sat Oct 26 07:49:10 2024
|