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Zinc in PDB 3k9t: Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution

Protein crystallography data

The structure of Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution, PDB code: 3k9t was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.06 / 2.37
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 153.782, 153.782, 168.378, 90.00, 90.00, 120.00
R / Rfree (%) 16.9 / 21.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution (pdb code 3k9t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution, PDB code: 3k9t:

Zinc binding site 1 out of 1 in 3k9t

Go back to Zinc Binding Sites List in 3k9t
Zinc binding site 1 out of 1 in the Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn435

b:27.2
occ:1.00
OD2 A:ASP195 1.9 19.9 1.0
N3 A:IMD438 2.0 26.3 1.0
NE2 A:HIS189 2.1 19.8 1.0
NE2 A:HIS324 2.1 24.5 1.0
CG A:ASP195 2.8 22.5 1.0
C4 A:IMD438 2.9 31.3 1.0
CD2 A:HIS189 3.0 23.8 1.0
CD2 A:HIS324 3.0 23.7 1.0
CE1 A:HIS189 3.1 11.9 1.0
OD1 A:ASP195 3.1 24.2 1.0
CE1 A:HIS324 3.1 24.2 1.0
C2 A:IMD438 3.1 47.2 1.0
C5 A:IMD438 4.1 50.0 1.0
CG A:HIS189 4.1 30.9 1.0
ND1 A:HIS189 4.2 18.2 1.0
CG A:HIS324 4.2 26.7 1.0
ND1 A:HIS324 4.2 23.0 1.0
N1 A:IMD438 4.2 28.7 1.0
CB A:ASP195 4.2 22.3 1.0
OH A:TYR186 4.4 25.2 1.0
CE2 A:TYR323 4.7 46.3 1.0
CD2 A:TYR323 4.8 49.8 1.0
CE1 A:TYR186 4.9 24.8 1.0
CE2 A:TYR127 5.0 41.1 1.0
O A:ASP195 5.0 29.5 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
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