Atomistry » Zinc » PDB 3jze-3kee » 3k9t
Atomistry »
  Zinc »
    PDB 3jze-3kee »
      3k9t »

Zinc in PDB 3k9t: Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution

Protein crystallography data

The structure of Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution, PDB code: 3k9t was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.06 / 2.37
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 153.782, 153.782, 168.378, 90.00, 90.00, 120.00
R / Rfree (%) 16.9 / 21.2

Other elements in 3k9t:

The structure of Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution (pdb code 3k9t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution, PDB code: 3k9t:

Zinc binding site 1 out of 1 in 3k9t

Go back to Zinc Binding Sites List in 3k9t
Zinc binding site 1 out of 1 in the Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn435

b:27.2
occ:1.00
OD2 A:ASP195 1.9 19.9 1.0
N3 A:IMD438 2.0 26.3 1.0
NE2 A:HIS189 2.1 19.8 1.0
NE2 A:HIS324 2.1 24.5 1.0
CG A:ASP195 2.8 22.5 1.0
C4 A:IMD438 2.9 31.3 1.0
CD2 A:HIS189 3.0 23.8 1.0
CD2 A:HIS324 3.0 23.7 1.0
CE1 A:HIS189 3.1 11.9 1.0
OD1 A:ASP195 3.1 24.2 1.0
CE1 A:HIS324 3.1 24.2 1.0
C2 A:IMD438 3.1 47.2 1.0
C5 A:IMD438 4.1 50.0 1.0
CG A:HIS189 4.1 30.9 1.0
ND1 A:HIS189 4.2 18.2 1.0
CG A:HIS324 4.2 26.7 1.0
ND1 A:HIS324 4.2 23.0 1.0
N1 A:IMD438 4.2 28.7 1.0
CB A:ASP195 4.2 22.3 1.0
OH A:TYR186 4.4 25.2 1.0
CE2 A:TYR323 4.7 46.3 1.0
CD2 A:TYR323 4.8 49.8 1.0
CE1 A:TYR186 4.9 24.8 1.0
CE2 A:TYR127 5.0 41.1 1.0
O A:ASP195 5.0 29.5 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Oct 26 07:45:11 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy