Zinc in PDB 3jca: Core Model of the Mouse Mammary Tumor Virus Intasome

The binding sites of Zinc atom in the Core Model of the Mouse Mammary Tumor Virus Intasome (pdb code 3jca). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Core Model of the Mouse Mammary Tumor Virus Intasome, PDB code: 3jca:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Core Model of the Mouse Mammary Tumor Virus Intasome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Core Model of the Mouse Mammary Tumor Virus Intasome within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn500 b:0.3 occ:1.00 ND1 A:HIS13 1.9 0.3 1.0 NE2 A:HIS9 2.3 0.1 1.0 SG A:CYS40 2.4 0.7 1.0 SG A:CYS37 2.5 0.6 1.0 CE1 A:HIS13 2.8 0.6 1.0 CE1 A:HIS9 2.8 1.0 1.0 CG A:HIS13 2.9 0.6 1.0 CD2 A:HIS9 2.9 0.0 1.0 CB A:CYS37 3.2 0.9 1.0 CB A:HIS13 3.3 0.6 1.0 ND1 A:HIS9 3.5 0.3 1.0 CG A:HIS9 3.6 0.4 1.0 CA A:HIS13 3.6 0.4 1.0 O A:HIS9 3.8 0.4 1.0 NE2 A:HIS13 3.9 0.8 1.0 CD2 A:HIS13 3.9 0.3 1.0 CB A:CYS40 4.1 0.8 1.0 C A:HIS9 4.4 0.4 1.0 C A:HIS13 4.5 0.3 1.0 CA A:CYS37 4.6 0.5 1.0 N A:HIS13 4.7 0.1 1.0 CB A:HIS9 4.9 1.0 1.0 O A:HIS13 4.9 0.7 1.0

Zinc binding site 2 out of 4 in the Core Model of the Mouse Mammary Tumor Virus Intasome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Core Model of the Mouse Mammary Tumor Virus Intasome within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn500 b:0.7 occ:1.00 NE2 B:HIS9 1.8 0.8 1.0 SG B:CYS37 1.9 0.8 1.0 SG B:CYS40 1.9 0.6 1.0 CD2 B:HIS9 2.4 0.8 1.0 CB B:CYS37 2.5 0.7 1.0 CE1 B:HIS9 2.7 1.0 1.0 ND1 B:HIS13 2.8 0.7 1.0 CB B:CYS40 3.3 0.2 1.0 CG B:HIS9 3.3 0.8 1.0 ND1 B:HIS9 3.4 0.1 1.0 CG B:HIS13 3.7 0.8 1.0 CE1 B:HIS13 3.7 0.4 1.0 CB B:HIS13 3.8 0.1 1.0 CA B:CYS37 4.0 0.3 1.0 OD1 B:ASN39 4.0 0.9 1.0 CA B:HIS13 4.1 0.3 1.0 O B:HIS9 4.2 0.2 1.0 CA B:CYS40 4.5 0.4 1.0 O B:VAL34 4.5 0.5 1.0 C B:HIS9 4.6 0.5 1.0 N B:CYS40 4.6 0.9 1.0 CB B:HIS9 4.6 0.3 1.0 C B:CYS37 4.7 0.7 1.0 O B:ILE33 4.8 0.2 1.0 NE2 B:HIS13 4.8 0.7 1.0 CD2 B:HIS13 4.8 0.7 1.0 C B:HIS13 4.8 0.1 1.0 N B:CYS37 4.8 0.4 1.0 CA B:VAL34 4.9 0.3 1.0

Zinc binding site 3 out of 4 in the Core Model of the Mouse Mammary Tumor Virus Intasome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Core Model of the Mouse Mammary Tumor Virus Intasome within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn500 b:0.5 occ:1.00 ND1 E:HIS13 2.0 0.9 1.0 NE2 E:HIS9 2.5 0.3 1.0 SG E:CYS37 2.5 0.3 1.0 SG E:CYS40 2.6 0.0 1.0 CE1 E:HIS13 2.8 0.6 1.0 CE1 E:HIS9 2.9 0.4 1.0 CD2 E:HIS9 3.0 0.7 1.0 CG E:HIS13 3.1 0.8 1.0 CB E:CYS37 3.3 0.4 1.0 ND1 E:HIS9 3.6 0.9 1.0 CA E:HIS13 3.6 0.8 1.0 CB E:HIS13 3.7 0.2 1.0 CG E:HIS9 3.7 0.9 1.0 O E:HIS9 3.7 0.4 1.0 NE2 E:HIS13 3.9 0.9 1.0 CD2 E:HIS13 4.1 0.5 1.0 CB E:CYS40 4.3 0.6 1.0 C E:HIS9 4.4 0.7 1.0 C E:HIS13 4.6 0.7 1.0 N E:HIS13 4.6 0.7 1.0 CA E:CYS37 4.6 0.4 1.0 CB E:HIS9 4.9 0.1 1.0

Zinc binding site 4 out of 4 in the Core Model of the Mouse Mammary Tumor Virus Intasome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Core Model of the Mouse Mammary Tumor Virus Intasome within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn500 b:0.2 occ:1.00 SG F:CYS40 1.9 0.9 1.0 SG F:CYS37 1.9 0.0 1.0 NE2 F:HIS9 2.2 0.2 1.0 ND1 F:HIS13 2.3 0.9 1.0 CD2 F:HIS9 2.6 0.7 1.0 CE1 F:HIS9 2.9 0.4 1.0 CB F:CYS37 2.9 1.0 1.0 CG F:HIS13 3.2 0.1 1.0 CE1 F:HIS13 3.3 0.4 1.0 CB F:HIS13 3.4 0.1 1.0 CB F:CYS40 3.4 0.8 1.0 CG F:HIS9 3.4 0.3 1.0 ND1 F:HIS9 3.5 0.5 1.0 OD1 F:ASN39 3.7 0.0 1.0 CA F:HIS13 3.7 0.5 1.0 O F:HIS9 3.8 0.6 1.0 CA F:CYS37 4.3 0.9 1.0 CD2 F:HIS13 4.3 0.9 1.0 NE2 F:HIS13 4.3 0.8 1.0 C F:HIS9 4.4 0.1 1.0 C F:HIS13 4.6 0.2 1.0 CA F:CYS40 4.6 0.0 1.0 CB F:HIS9 4.7 0.8 1.0 N F:CYS40 4.7 0.5 1.0 CG F:ASN39 4.8 0.8 1.0 N F:HIS13 4.8 0.8 1.0 O F:HIS13 4.8 0.6 1.0 C F:CYS37 4.9 0.3 1.0 CA F:HIS9 4.9 0.6 1.0

A.Ballandras-Colas, M.Brown, N.J.Cook, T.G.Dewdney, B.Demeler, P.Cherepanov, D.Lyumkis, A.N.Engelman. Cryo-Em Reveals A Novel Octameric Integrase Structure For Betaretroviral Intasome Function. Nature V. 530 358 2016.
ISSN: ESSN 1476-4687
PubMed: 26887496
DOI: 10.1038/NATURE16955