Zinc in PDB 3jbx: Cryo-Electron Microscopy Structure of Rag Signal End Complex (C2 Symmetry)

The structure of Cryo-Electron Microscopy Structure of Rag Signal End Complex (C2 Symmetry) also contains other interesting chemical elements:

Magnesium

(Mg)

4 atoms

The binding sites of Zinc atom in the Cryo-Electron Microscopy Structure of Rag Signal End Complex (C2 Symmetry) (pdb code 3jbx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Electron Microscopy Structure of Rag Signal End Complex (C2 Symmetry), PDB code: 3jbx:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Electron Microscopy Structure of Rag Signal End Complex (C2 Symmetry)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Electron Microscopy Structure of Rag Signal End Complex (C2 Symmetry) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1101 b:34.0 occ:1.00 NE2 A:HIS959 2.1 34.5 1.0 SG A:CYS749 2.3 33.5 1.0 NE2 A:HIS964 2.5 62.7 1.0 SG A:CYS752 2.6 57.2 1.0 CD2 A:HIS964 2.6 51.1 1.0 CD2 A:HIS959 2.8 32.6 1.0 CE1 A:HIS959 3.3 37.7 1.0 CB A:CYS749 3.7 34.4 1.0 CB A:CYS752 3.8 37.2 1.0 CD1 A:LEU751 3.8 46.2 1.0 CE1 A:HIS964 3.8 67.8 1.0 CG A:HIS964 4.0 33.7 1.0 CG A:HIS959 4.0 33.0 1.0 ND1 A:HIS959 4.2 34.2 1.0 ND1 A:HIS964 4.5 56.4 1.0 N A:CYS752 4.6 36.3 1.0 CB A:ALA963 4.6 33.1 1.0 OG A:SER754 4.7 54.2 1.0 CB A:HIS766 4.7 37.1 1.0 CA A:CYS752 4.7 37.5 1.0 CA A:LYS960 4.7 31.4 1.0 CG A:HIS766 4.8 57.4 1.0 CG A:LYS960 4.9 37.1 1.0 CA A:CYS749 5.0 52.2 1.0 N A:LYS960 5.0 31.2 1.0

Zinc binding site 2 out of 2 in the Cryo-Electron Microscopy Structure of Rag Signal End Complex (C2 Symmetry)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Electron Microscopy Structure of Rag Signal End Complex (C2 Symmetry) within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1101 b:41.9 occ:1.00 NE2 C:HIS959 2.0 43.0 1.0 SG C:CYS749 2.2 53.9 1.0 SG C:CYS752 2.3 64.3 1.0 CB C:CYS749 2.7 50.3 1.0 CD2 C:HIS959 2.7 41.6 1.0 NE2 C:HIS964 2.8 65.3 1.0 CE1 C:HIS959 3.2 47.8 1.0 CD2 C:HIS964 3.2 39.7 1.0 CB C:CYS752 3.9 46.4 1.0 CG C:HIS959 3.9 42.2 1.0 CE1 C:HIS964 4.0 65.8 1.0 ND1 C:HIS959 4.1 43.9 1.0 CA C:CYS749 4.1 56.7 1.0 OG C:SER754 4.2 66.3 1.0 N C:CYS752 4.3 41.3 1.0 CG C:HIS964 4.5 39.4 1.0 CA C:CYS752 4.6 43.4 1.0 O C:CYS752 4.7 44.7 1.0 CG C:LYS960 4.8 37.7 1.0 ND1 C:HIS964 4.8 56.0 1.0 C C:CYS752 4.9 44.4 1.0 N C:CYS749 4.9 41.1 1.0

H.Ru, M.G.Chambers, T.M.Fu, A.B.Tong, M.Liao, H.Wu. Molecular Mechanism of V(D)J Recombination From Synaptic RAG1-RAG2 Complex Structures. Cell(Cambridge,Mass.) V. 163 1138 2015.
ISSN: ISSN 0092-8674
PubMed: 26548953
DOI: 10.1016/J.CELL.2015.10.055