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Zinc in PDB 3jam: Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast

Other elements in 3jam:

The structure of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast also contains other interesting chemical elements:

Magnesium (Mg) 80 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast (pdb code 3jam). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast, PDB code: 3jam:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 3jam

Go back to Zinc Binding Sites List in 3jam
Zinc binding site 1 out of 3 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Zn500

b:32.3
occ:1.00
SG a:CYS26 2.3 46.9 1.0
SG a:CYS77 2.3 49.4 1.0
SG a:CYS23 2.5 46.5 1.0
SG a:CYS74 2.7 51.5 1.0
CB a:CYS77 3.2 48.5 1.0
CB a:CYS23 3.3 46.5 1.0
CB a:CYS26 3.3 46.7 1.0
N a:CYS26 3.6 47.0 1.0
CB a:CYS74 3.6 51.7 1.0
CA a:CYS26 3.9 46.8 1.0
CB a:ARG28 4.1 47.0 1.0
N a:CYS74 4.3 52.7 1.0
C a:CYS26 4.4 46.8 1.0
N a:ARG28 4.4 46.4 1.0
CB a:ASN25 4.4 48.3 1.0
N a:SER27 4.4 46.9 1.0
CA a:CYS74 4.5 51.4 1.0
CA a:CYS77 4.5 48.1 1.0
ND2 a:ASN25 4.5 49.2 1.0
C a:ASN25 4.6 47.3 1.0
O a:CYS74 4.6 50.9 1.0
N a:CYS77 4.7 48.5 1.0
CA a:CYS23 4.8 46.9 1.0
CA a:ARG28 4.9 46.2 1.0
CA a:ASN25 4.9 47.5 1.0
N a:ASN25 4.9 47.3 1.0
C a:CYS74 5.0 50.8 1.0
OG a:SER76 5.0 48.8 1.0

Zinc binding site 2 out of 3 in 3jam

Go back to Zinc Binding Sites List in 3jam
Zinc binding site 2 out of 3 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Zn101

b:0.1
occ:1.00
N b:CYS40 3.0 0.9 1.0
SG b:CYS37 3.2 0.2 1.0
CA b:GLY39 3.3 0.7 1.0
N b:GLY39 3.6 0.6 1.0
SG b:CYS40 3.6 0.8 1.0
SG b:CYS59 3.6 0.2 1.0
C b:GLY39 3.7 0.6 1.0
CB b:CYS40 4.0 0.7 1.0
CB b:CYS37 4.1 0.1 1.0
CA b:CYS40 4.1 0.2 1.0
CG2 b:THR61 4.3 92.5 1.0
O b:CYS40 4.8 0.3 1.0
C b:CYS37 4.9 0.1 1.0
O b:GLY39 4.9 0.4 1.0
C b:PRO38 4.9 0.2 1.0
O b:CYS37 5.0 0.7 1.0

Zinc binding site 3 out of 3 in 3jam

Go back to Zinc Binding Sites List in 3jam
Zinc binding site 3 out of 3 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Zn202

b:0.4
occ:1.00
N f:CYS142 3.2 0.5 1.0
CG2 f:ILE128 3.3 0.1 1.0
CB f:CYS139 3.3 0.5 1.0
SG f:CYS121 3.3 0.1 1.0
SG f:CYS142 3.4 0.5 1.0
N f:LYS141 3.6 0.9 1.0
CB f:LYS141 3.6 0.1 1.0
CB f:CYS142 3.8 0.5 1.0
CA f:LYS141 3.9 0.2 1.0
C f:LYS141 4.0 0.6 1.0
SG f:CYS139 4.0 0.9 1.0
CB f:CYS121 4.1 0.5 1.0
N f:GLY140 4.1 0.5 1.0
CA f:CYS142 4.1 0.5 1.0
CB f:ILE128 4.2 0.7 1.0
CD1 f:ILE128 4.4 0.0 1.0
CA f:CYS139 4.5 0.0 1.0
C f:GLY140 4.6 0.8 1.0
CG1 f:ILE128 4.7 0.8 1.0
CG f:LYS141 4.8 0.0 1.0
C f:CYS139 4.9 0.2 1.0
CA f:GLY140 4.9 0.6 1.0

Reference:

J.L.Llacer, T.Hussain, L.Marler, C.E.Aitken, A.Thakur, J.R.Lorsch, A.G.Hinnebusch, V.Ramakrishnan. Conformational Differences Between Open and Closed States of the Eukaryotic Translation Initiation Complex. Mol.Cell V. 59 399 2015.
ISSN: ISSN 1097-2765
PubMed: 26212456
DOI: 10.1016/J.MOLCEL.2015.06.033
Page generated: Wed Dec 16 04:27:47 2020

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