Zinc in PDB 3jam: Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast

The structure of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast also contains other interesting chemical elements:

Magnesium

(Mg)

80 atoms

The binding sites of Zinc atom in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast (pdb code 3jam). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast, PDB code: 3jam:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range: probe atom residue distance (Å) B Occ a:Zn500 b:32.3 occ:1.00 SG a:CYS26 2.3 46.9 1.0 SG a:CYS77 2.3 49.4 1.0 SG a:CYS23 2.5 46.5 1.0 SG a:CYS74 2.7 51.5 1.0 CB a:CYS77 3.2 48.5 1.0 CB a:CYS23 3.3 46.5 1.0 CB a:CYS26 3.3 46.7 1.0 N a:CYS26 3.6 47.0 1.0 CB a:CYS74 3.6 51.7 1.0 CA a:CYS26 3.9 46.8 1.0 CB a:ARG28 4.1 47.0 1.0 N a:CYS74 4.3 52.7 1.0 C a:CYS26 4.4 46.8 1.0 N a:ARG28 4.4 46.4 1.0 CB a:ASN25 4.4 48.3 1.0 N a:SER27 4.4 46.9 1.0 CA a:CYS74 4.5 51.4 1.0 CA a:CYS77 4.5 48.1 1.0 ND2 a:ASN25 4.5 49.2 1.0 C a:ASN25 4.6 47.3 1.0 O a:CYS74 4.6 50.9 1.0 N a:CYS77 4.7 48.5 1.0 CA a:CYS23 4.8 46.9 1.0 CA a:ARG28 4.9 46.2 1.0 CA a:ASN25 4.9 47.5 1.0 N a:ASN25 4.9 47.3 1.0 C a:CYS74 5.0 50.8 1.0 OG a:SER76 5.0 48.8 1.0

Zinc binding site 2 out of 3 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range: probe atom residue distance (Å) B Occ b:Zn101 b:0.1 occ:1.00 N b:CYS40 3.0 0.9 1.0 SG b:CYS37 3.2 0.2 1.0 CA b:GLY39 3.3 0.7 1.0 N b:GLY39 3.6 0.6 1.0 SG b:CYS40 3.6 0.8 1.0 SG b:CYS59 3.6 0.2 1.0 C b:GLY39 3.7 0.6 1.0 CB b:CYS40 4.0 0.7 1.0 CB b:CYS37 4.1 0.1 1.0 CA b:CYS40 4.1 0.2 1.0 CG2 b:THR61 4.3 92.5 1.0 O b:CYS40 4.8 0.3 1.0 C b:CYS37 4.9 0.1 1.0 O b:GLY39 4.9 0.4 1.0 C b:PRO38 4.9 0.2 1.0 O b:CYS37 5.0 0.7 1.0

Zinc binding site 3 out of 3 in the Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryoem Structure of 40S-EIF1A-EIF1 Complex From Yeast within 5.0Å range: probe atom residue distance (Å) B Occ f:Zn202 b:0.4 occ:1.00 N f:CYS142 3.2 0.5 1.0 CG2 f:ILE128 3.3 0.1 1.0 CB f:CYS139 3.3 0.5 1.0 SG f:CYS121 3.3 0.1 1.0 SG f:CYS142 3.4 0.5 1.0 N f:LYS141 3.6 0.9 1.0 CB f:LYS141 3.6 0.1 1.0 CB f:CYS142 3.8 0.5 1.0 CA f:LYS141 3.9 0.2 1.0 C f:LYS141 4.0 0.6 1.0 SG f:CYS139 4.0 0.9 1.0 CB f:CYS121 4.1 0.5 1.0 N f:GLY140 4.1 0.5 1.0 CA f:CYS142 4.1 0.5 1.0 CB f:ILE128 4.2 0.7 1.0 CD1 f:ILE128 4.4 0.0 1.0 CA f:CYS139 4.5 0.0 1.0 C f:GLY140 4.6 0.8 1.0 CG1 f:ILE128 4.7 0.8 1.0 CG f:LYS141 4.8 0.0 1.0 C f:CYS139 4.9 0.2 1.0 CA f:GLY140 4.9 0.6 1.0

J.L.Llacer, T.Hussain, L.Marler, C.E.Aitken, A.Thakur, J.R.Lorsch, A.G.Hinnebusch, V.Ramakrishnan. Conformational Differences Between Open and Closed States of the Eukaryotic Translation Initiation Complex. Mol.Cell V. 59 399 2015.
ISSN: ISSN 1097-2765
PubMed: 26212456
DOI: 10.1016/J.MOLCEL.2015.06.033