Zinc in PDB 3irb: Crystal Structure of Protein with Unknown Function From DUF35 Family (13815350) From Sulfolobus Solfataricus at 1.80 A Resolution

The structure of Crystal Structure of Protein with Unknown Function From DUF35 Family (13815350) From Sulfolobus Solfataricus at 1.80 A Resolution, PDB code: 3irb was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.94 / 1.80
Space group	P 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	75.170, 75.170, 115.400, 90.00, 90.00, 90.00
R / Rfree (%)	16.9 / 20

The binding sites of Zinc atom in the Crystal Structure of Protein with Unknown Function From DUF35 Family (13815350) From Sulfolobus Solfataricus at 1.80 A Resolution (pdb code 3irb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Protein with Unknown Function From DUF35 Family (13815350) From Sulfolobus Solfataricus at 1.80 A Resolution, PDB code: 3irb:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Protein with Unknown Function From DUF35 Family (13815350) From Sulfolobus Solfataricus at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Protein with Unknown Function From DUF35 Family (13815350) From Sulfolobus Solfataricus at 1.80 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:13.0 occ:1.00 SG A:CYS66 2.3 17.2 1.0 SG A:CYS52 2.3 17.8 1.0 SG A:CYS63 2.3 17.6 1.0 SG A:CYS49 2.3 16.1 1.0 CB A:CYS49 3.2 13.3 1.0 CB A:CYS66 3.2 22.0 1.0 CB A:CYS52 3.3 17.6 1.0 CB A:CYS63 3.3 16.0 1.0 N A:CYS52 3.7 15.7 1.0 N A:CYS66 4.0 23.0 1.0 CA A:CYS52 4.1 15.2 1.0 CA A:CYS66 4.2 21.1 1.0 CB A:LYS51 4.5 16.5 1.0 CB A:HIS65 4.5 29.0 1.0 C A:LYS51 4.6 18.3 1.0 NH1 A:ARG54 4.6 31.8 1.0 CA A:CYS49 4.6 14.9 1.0 CA A:CYS63 4.8 16.8 1.0 CG2 A:VAL68 4.8 16.0 1.0 C A:HIS65 4.9 26.9 1.0 CA A:LYS51 4.9 14.5 1.0 C A:CYS52 4.9 16.5 1.0 N A:LYS51 4.9 14.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Protein with Unknown Function From DUF35 Family (13815350) From Sulfolobus Solfataricus at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Protein with Unknown Function From DUF35 Family (13815350) From Sulfolobus Solfataricus at 1.80 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:13.5 occ:1.00 SG B:CYS66 2.3 20.6 1.0 SG B:CYS49 2.3 16.8 1.0 SG B:CYS63 2.3 17.0 1.0 SG B:CYS52 2.4 17.0 1.0 CB B:CYS66 3.1 17.3 1.0 CB B:CYS49 3.1 17.8 1.0 CB B:CYS63 3.3 16.2 1.0 CB B:CYS52 3.3 22.0 1.0 N B:CYS52 3.7 20.2 1.0 N B:CYS66 3.8 15.9 1.0 CA B:CYS52 4.1 19.5 1.0 CA B:CYS66 4.1 16.8 1.0 CB B:LYS51 4.5 21.5 1.0 CA B:CYS49 4.6 18.8 1.0 C B:LYS51 4.7 22.0 1.0 CB B:HIS65 4.7 18.9 1.0 CA B:CYS63 4.7 16.1 1.0 C B:CYS52 4.8 20.1 1.0 C B:HIS65 4.9 21.0 1.0 NH1 B:ARG54 4.9 20.9 1.0 N B:GLY53 4.9 21.3 1.0 CA B:LYS51 5.0 21.8 1.0 N B:LYS51 5.0 21.6 1.0

S.S.Krishna, L.Aravind, C.Bakolitsa, J.Caruthers, D.Carlton, M.D.Miller, P.Abdubek, T.Astakhova, H.L.Axelrod, H.J.Chiu, T.Clayton, M.C.Deller, L.Duan, J.Feuerhelm, J.C.Grant, G.W.Han, L.Jaroszewski, K.K.Jin, H.E.Klock, M.W.Knuth, A.Kumar, D.Marciano, D.Mcmullan, A.T.Morse, E.Nigoghossian, L.Okach, R.Reyes, C.L.Rife, H.Van Den Bedem, D.Weekes, Q.Xu, K.O.Hodgson, J.Wooley, M.A.Elsliger, A.M.Deacon, A.Godzik, S.A.Lesley, I.A.Wilson. The Structure of SSO2064, the First Representative of Pfam Family PF01796, Reveals A Novel Two-Domain Zinc-Ribbon Ob-Fold Architecture with A Potential Acyl-Coa-Binding Role. Acta Crystallogr.,Sect.F V. 66 1160 2010.
ISSN: ESSN 1744-3091
PubMed: 20944206
DOI: 10.1107/S1744309110002514