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Zinc in PDB 3igk: Diversity in Dna Recognition By P53 Revealed By Crystal Structures with Hoogsteen Base Pairs (P53-Dna Complex 2)

Protein crystallography data

The structure of Diversity in Dna Recognition By P53 Revealed By Crystal Structures with Hoogsteen Base Pairs (P53-Dna Complex 2), PDB code: 3igk was solved by O.Suad, D.Rabinovich, H.Rozenberg, Z.Shakked, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.81 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 137.298, 49.624, 33.879, 90.00, 94.72, 90.00
R / Rfree (%) 15 / 21.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Diversity in Dna Recognition By P53 Revealed By Crystal Structures with Hoogsteen Base Pairs (P53-Dna Complex 2) (pdb code 3igk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Diversity in Dna Recognition By P53 Revealed By Crystal Structures with Hoogsteen Base Pairs (P53-Dna Complex 2), PDB code: 3igk:

Zinc binding site 1 out of 1 in 3igk

Go back to Zinc Binding Sites List in 3igk
Zinc binding site 1 out of 1 in the Diversity in Dna Recognition By P53 Revealed By Crystal Structures with Hoogsteen Base Pairs (P53-Dna Complex 2)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Diversity in Dna Recognition By P53 Revealed By Crystal Structures with Hoogsteen Base Pairs (P53-Dna Complex 2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1

b:20.8
occ:1.00
ND1 A:HIS179 2.1 22.8 1.0
SG A:CYS242 2.3 19.9 1.0
SG A:CYS176 2.3 20.1 1.0
SG A:CYS238 2.4 20.5 1.0
CE1 A:HIS179 3.0 21.8 1.0
CB A:CYS242 3.1 20.8 1.0
CB A:CYS238 3.1 18.9 1.0
CG A:HIS179 3.1 22.4 1.0
CB A:CYS176 3.4 20.8 1.0
CB A:HIS179 3.5 22.4 1.0
CA A:CYS238 3.7 19.9 1.0
N A:CYS176 4.1 19.6 1.0
NE2 A:HIS179 4.2 20.1 1.0
CD2 A:HIS179 4.3 25.6 1.0
N A:HIS179 4.3 24.9 1.0
CA A:CYS176 4.3 17.8 1.0
O A:MET237 4.4 22.3 1.0
CA A:CYS242 4.5 17.0 1.0
N A:ASN239 4.5 17.9 1.0
CA A:HIS179 4.5 22.3 1.0
C A:CYS238 4.6 18.5 1.0
N A:CYS238 4.7 20.4 1.0
O A:HOH10 4.8 20.5 1.0
C A:CYS176 4.9 19.4 1.0
O A:CYS176 4.9 21.9 1.0

Reference:

M.Kitayner, H.Rozenberg, R.Rohs, O.Suad, D.Rabinovich, B.Honig, Z.Shakked. Diversity in Dna Recognition By P53 Revealed By Crystal Structures with Hoogsteen Base Pairs Nat.Struct.Mol.Biol. V. 17 423 2010.
ISSN: ISSN 1545-9993
PubMed: 20364130
DOI: 10.1038/NSMB.1800
Page generated: Wed Dec 16 04:26:20 2020

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