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Zinc in PDB 3hzv: Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo(2.8) Kdo(2.4)Kdo

Protein crystallography data

The structure of Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo(2.8) Kdo(2.4)Kdo, PDB code: 3hzv was solved by C.L.Brooks, S.Muller-Loennies, S.N.Borisova, L.Brade, P.Kosma, T.Hirama, C.R.Mackenzie, H.Brade, S.V.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.99 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.050, 80.800, 128.750, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 24.9

Other elements in 3hzv:

The structure of Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo(2.8) Kdo(2.4)Kdo also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo(2.8) Kdo(2.4)Kdo (pdb code 3hzv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo(2.8) Kdo(2.4)Kdo, PDB code: 3hzv:

Zinc binding site 1 out of 1 in 3hzv

Go back to Zinc Binding Sites List in 3hzv
Zinc binding site 1 out of 1 in the Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo(2.8) Kdo(2.4)Kdo


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo(2.8) Kdo(2.4)Kdo within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn213

b:26.6
occ:1.00
OE2 B:GLU58 2.1 23.5 1.0
CD B:GLU58 2.8 23.0 1.0
OE1 B:GLU58 3.0 19.8 1.0
O B:THR57 4.2 23.0 1.0
NH1 B:ARG52 4.2 23.9 1.0
CG B:GLU58 4.3 18.9 1.0
NH2 B:ARG52 4.4 18.6 1.0
CZ B:ARG52 4.7 22.9 1.0

Reference:

C.L.Brooks, S.Muller-Loennies, S.N.Borisova, L.Brade, P.Kosma, T.Hirama, C.R.Mackenzie, H.Brade, S.V.Evans. Antibodies Raised Against Chlamydial Lipopolysaccharide Antigens Reveal Convergence in Germline Gene Usage and Differential Epitope Recognition Biochemistry V. 49 570 2010.
ISSN: ISSN 0006-2960
PubMed: 20000757
DOI: 10.1021/BI9011308
Page generated: Wed Dec 16 04:25:20 2020

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