Atomistry » Zinc » PDB 3hqw-3i4c » 3hxf
Atomistry »
  Zinc »
    PDB 3hqw-3i4c »
      3hxf »

Zinc in PDB 3hxf: Engineered Rabggtase in Complex with A Peptidomimetic Inhibitor (Compound 32)

Enzymatic activity of Engineered Rabggtase in Complex with A Peptidomimetic Inhibitor (Compound 32)

All present enzymatic activity of Engineered Rabggtase in Complex with A Peptidomimetic Inhibitor (Compound 32):
2.5.1.60;

Protein crystallography data

The structure of Engineered Rabggtase in Complex with A Peptidomimetic Inhibitor (Compound 32), PDB code: 3hxf was solved by Z.Guo, K.Alexandrov, H.Waldmann, R.S.Goody, W.Blankenfeldt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.40 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.720, 90.865, 114.565, 90.00, 90.00, 90.00
R / Rfree (%) 15.3 / 21.2

Other elements in 3hxf:

The structure of Engineered Rabggtase in Complex with A Peptidomimetic Inhibitor (Compound 32) also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Engineered Rabggtase in Complex with A Peptidomimetic Inhibitor (Compound 32) (pdb code 3hxf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Engineered Rabggtase in Complex with A Peptidomimetic Inhibitor (Compound 32), PDB code: 3hxf:

Zinc binding site 1 out of 1 in 3hxf

Go back to Zinc Binding Sites List in 3hxf
Zinc binding site 1 out of 1 in the Engineered Rabggtase in Complex with A Peptidomimetic Inhibitor (Compound 32)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Engineered Rabggtase in Complex with A Peptidomimetic Inhibitor (Compound 32) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn332

b:25.4
occ:1.00
OD2 B:ASP238 2.1 22.6 1.0
NE2 B:HIS290 2.1 18.4 1.0
N8 B:BD9334 2.3 39.3 1.0
SG B:CYS240 2.4 24.0 1.0
OD1 B:ASP238 2.6 24.5 1.0
CG B:ASP238 2.7 22.5 1.0
CD2 B:HIS290 3.0 21.0 1.0
CE1 B:HIS290 3.1 19.5 1.0
C33 B:BD9334 3.2 40.2 1.0
C34 B:BD9334 3.3 45.0 1.0
CB B:CYS240 3.4 23.8 1.0
N6 B:BD9334 3.9 57.9 1.0
CE1 B:PHE289 4.1 21.3 1.0
CB B:ASP238 4.1 21.1 1.0
C29 B:BD9334 4.1 57.3 1.0
CG B:HIS290 4.2 18.8 1.0
O B:HOH424 4.2 39.8 1.0
ND1 B:HIS290 4.2 19.2 1.0
N B:CYS240 4.2 22.1 1.0
CB B:ASP280 4.3 23.9 1.0
N9 B:BD9334 4.4 45.1 1.0
C32 B:BD9334 4.4 40.6 1.0
CA B:CYS240 4.4 22.5 1.0
CD1 B:PHE289 4.6 20.8 1.0

Reference:

K.T.Tan, E.Guiu-Rozas, R.S.Bon, Z.Guo, C.Delon, S.Wetzel, S.Arndt, K.Alexandrov, H.Waldmann, R.S.Goody, Y.W.Wu, W.Blankenfeldt. Design, Synthesis, and Characterization of Peptide-Based Rab Geranylgeranyl Transferase Inhibitors J.Med.Chem. V. 52 8025 2009.
ISSN: ISSN 0022-2623
PubMed: 19894725
DOI: 10.1021/JM901117D
Page generated: Wed Dec 16 04:25:15 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy