Zinc in PDB 3hpa: Crystal Structure of An Amidohydrolase Gi:44264246 From An Evironmental Sample of Sargasso Sea

The structure of Crystal Structure of An Amidohydrolase Gi:44264246 From An Evironmental Sample of Sargasso Sea, PDB code: 3hpa was solved by A.A.Fedorov, E.V.Fedorov, R.Toro, F.M.Raushel, S.K.Burley, S.C.Almo, Newyork Sgx Research Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.62 / 2.20
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	83.304, 83.304, 229.125, 90.00, 90.00, 120.00
R / Rfree (%)	23.2 / 27.6

The binding sites of Zinc atom in the Crystal Structure of An Amidohydrolase Gi:44264246 From An Evironmental Sample of Sargasso Sea (pdb code 3hpa). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of An Amidohydrolase Gi:44264246 From An Evironmental Sample of Sargasso Sea, PDB code: 3hpa:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of An Amidohydrolase Gi:44264246 From An Evironmental Sample of Sargasso Sea


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of An Amidohydrolase Gi:44264246 From An Evironmental Sample of Sargasso Sea within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn480 b:43.9 occ:1.00 NE2 A:HIS93 2.1 29.1 1.0 NE2 A:HIS95 2.1 33.9 1.0 NE2 A:HIS259 2.3 40.6 1.0 OD1 A:ASP347 2.7 33.1 1.0 CD2 A:HIS95 3.0 34.7 1.0 CE1 A:HIS93 3.1 28.5 1.0 CD2 A:HIS93 3.1 30.8 1.0 CD2 A:HIS259 3.1 40.8 1.0 CE1 A:HIS95 3.2 33.2 1.0 CE1 A:HIS259 3.4 41.9 1.0 CG A:ASP347 3.7 31.9 1.0 NE2 A:HIS296 3.8 44.5 1.0 OD2 A:ASP347 4.0 29.5 1.0 CG A:HIS95 4.1 35.8 1.0 ND1 A:HIS93 4.2 30.5 1.0 ND1 A:HIS95 4.2 34.4 1.0 CG A:HIS93 4.2 31.4 1.0 CG A:HIS259 4.3 40.8 1.0 ND1 A:HIS259 4.4 42.3 1.0 CD2 A:HIS296 4.6 44.0 1.0 CE1 A:HIS296 4.6 44.7 1.0 CD2 A:HIS153 4.7 43.0 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of An Amidohydrolase Gi:44264246 From An Evironmental Sample of Sargasso Sea


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of An Amidohydrolase Gi:44264246 From An Evironmental Sample of Sargasso Sea within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn480 b:45.6 occ:1.00 NE2 B:HIS95 2.1 41.3 1.0 NE2 B:HIS93 2.1 32.3 1.0 NE2 B:HIS259 2.2 47.5 1.0 OD1 B:ASP347 2.7 42.6 1.0 CD2 B:HIS95 2.9 40.8 1.0 CD2 B:HIS93 3.0 35.0 1.0 CD2 B:HIS259 3.1 46.1 1.0 CE1 B:HIS93 3.2 31.6 1.0 CE1 B:HIS95 3.2 40.1 1.0 CE1 B:HIS259 3.2 46.0 1.0 CG B:ASP347 3.7 41.2 1.0 O B:HOH507 3.8 46.5 1.0 NE2 B:HIS296 3.9 48.7 1.0 OD2 B:ASP347 3.9 41.8 1.0 CG B:HIS95 4.1 40.6 1.0 ND1 B:HIS95 4.2 39.9 1.0 CG B:HIS93 4.2 34.9 1.0 ND1 B:HIS93 4.2 33.4 1.0 ND1 B:HIS259 4.3 45.5 1.0 CG B:HIS259 4.3 47.7 1.0 CD2 B:HIS296 4.7 48.6 1.0 CE1 B:HIS296 4.7 48.4 1.0 CD2 B:HIS153 5.0 49.6 1.0

R.S.Hall, A.A.Fedorov, R.Marti-Arbona, E.V.Fedorov, P.Kolb, J.M.Sauder, S.K.Burley, B.K.Shoichet, S.C.Almo, F.M.Raushel. The Hunt For 8-Oxoguanine Deaminase. J.Am.Chem.Soc. V. 132 1762 2010.
ISSN: ISSN 0002-7863
PubMed: 20088583
DOI: 10.1021/JA909817D