Zinc in PDB 3hc3: BHA10 IGG1 Fab Double Mutant Variant - Antibody Directed at Human Ltbr

The structure of BHA10 IGG1 Fab Double Mutant Variant - Antibody Directed at Human Ltbr, PDB code: 3hc3 was solved by J.W.Arndt, J.L.Jordan, A.Lugovskoy, D.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.36 / 1.72
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	74.463, 127.608, 123.253, 90.00, 90.00, 90.00
R / Rfree (%)	15.8 / 19

The binding sites of Zinc atom in the BHA10 IGG1 Fab Double Mutant Variant - Antibody Directed at Human Ltbr (pdb code 3hc3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the BHA10 IGG1 Fab Double Mutant Variant - Antibody Directed at Human Ltbr, PDB code: 3hc3:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the BHA10 IGG1 Fab Double Mutant Variant - Antibody Directed at Human Ltbr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of BHA10 IGG1 Fab Double Mutant Variant - Antibody Directed at Human Ltbr within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn214 b:32.5 occ:1.00 OD1 L:ASN137 2.0 27.9 1.0 OXT L:ACT217 2.1 40.1 1.0 OD1 L:ASN138 2.1 31.5 1.0 NE2 H:HIS167 2.1 29.1 1.0 O H:HOH351 2.3 27.1 1.0 O L:ACT217 2.6 39.5 1.0 C L:ACT217 2.7 40.5 1.0 CD2 H:HIS167 3.0 29.8 1.0 CG L:ASN137 3.0 26.8 1.0 CG L:ASN138 3.1 28.8 1.0 CE1 H:HIS167 3.2 29.6 1.0 ND2 L:ASN137 3.3 29.3 1.0 ND2 L:ASN138 3.7 30.4 1.0 OG L:SER174 4.0 24.1 1.0 O L:HOH400 4.2 48.7 1.0 CG H:HIS167 4.2 29.6 1.0 CH3 L:ACT217 4.2 40.0 1.0 O H:GLY165 4.2 33.3 1.0 ND1 H:HIS167 4.3 30.1 1.0 OG1 H:THR186 4.3 31.9 1.0 CB L:ASN138 4.3 26.1 1.0 CB L:ASN137 4.3 25.5 1.0 N L:ASN138 4.5 25.3 1.0 O L:HOH394 4.7 25.3 1.0 CG2 H:THR186 4.7 32.9 1.0 CA H:GLY165 4.8 33.8 1.0 C H:GLY165 4.8 33.0 1.0 CA L:ASN137 4.8 25.5 1.0 C L:ASN137 4.9 25.8 1.0 CA L:ASN138 4.9 25.7 1.0

Zinc binding site 2 out of 2 in the BHA10 IGG1 Fab Double Mutant Variant - Antibody Directed at Human Ltbr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of BHA10 IGG1 Fab Double Mutant Variant - Antibody Directed at Human Ltbr within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn215 b:21.6 occ:1.00 OD1 L:ASP151 1.9 22.4 1.0 OXT L:ACT216 1.9 21.0 1.0 ND1 L:HIS189 2.1 27.1 1.0 C L:ACT216 2.8 23.9 1.0 O L:ACT216 2.9 22.8 1.0 CG L:ASP151 3.0 20.2 1.0 CE1 L:HIS189 3.0 28.3 1.0 CG L:HIS189 3.1 27.5 1.0 CB L:ASP151 3.4 19.8 1.0 CB L:HIS189 3.5 26.6 1.0 CA L:HIS189 4.0 26.4 1.0 OD2 L:ASP151 4.1 20.0 1.0 NE2 L:HIS189 4.1 28.2 1.0 CD2 L:HIS189 4.2 28.2 1.0 CH3 L:ACT216 4.3 25.1 1.0 O L:LYS188 4.3 27.4 1.0 CG1 L:VAL150 4.6 21.3 1.0 CA L:ASP151 4.8 20.4 1.0 N L:HIS189 4.9 26.4 1.0 C L:LYS188 4.9 27.5 1.0 O L:VAL150 4.9 19.4 1.0 N L:ASP151 5.0 20.5 1.0

J.L.Jordan, J.W.Arndt, K.Hanf, G.Li, J.Hall, S.Demarest, F.Huang, X.Wu, B.Miller, S.Glaser, E.J.Fernandez, D.Wang, A.Lugovskoy. Structural Understanding of Stabilization Patterns in Engineered Bispecific Ig-Like Antibody Molecules Proteins V. 77 832 2009.
ISSN: ISSN 0887-3585
PubMed: 19626705
DOI: 10.1002/PROT.22502