Atomistry » Zinc » PDB 3gtq-3h66 » 3guc
Atomistry »
  Zinc »
    PDB 3gtq-3h66 »
      3guc »

Zinc in PDB 3guc: Human Ubiquitin-Activating Enzyme 5 in Complex with Amppnp

Protein crystallography data

The structure of Human Ubiquitin-Activating Enzyme 5 in Complex with Amppnp, PDB code: 3guc was solved by J.R.Walker, J.P.Bacik, Y.Li, J.Weigelt, C.Bountra, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Structural Genomics Consortium(Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.82 / 2.25
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 77.394, 77.394, 205.892, 90.00, 90.00, 120.00
R / Rfree (%) 20.3 / 25.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Human Ubiquitin-Activating Enzyme 5 in Complex with Amppnp (pdb code 3guc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Human Ubiquitin-Activating Enzyme 5 in Complex with Amppnp, PDB code: 3guc:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3guc

Go back to Zinc Binding Sites List in 3guc
Zinc binding site 1 out of 2 in the Human Ubiquitin-Activating Enzyme 5 in Complex with Amppnp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human Ubiquitin-Activating Enzyme 5 in Complex with Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:27.8
occ:1.00
SG A:CYS308 2.3 43.0 1.0
SG A:CYS226 2.4 42.1 1.0
SG A:CYS229 2.4 46.1 1.0
SG A:CYS303 2.4 45.6 1.0
CB A:CYS303 3.0 41.5 1.0
CB A:CYS308 3.1 40.2 1.0
CB A:CYS226 3.3 40.7 1.0
N A:CYS229 3.5 43.3 1.0
CB A:CYS229 3.5 44.6 1.0
CA A:CYS229 3.6 44.3 1.0
N A:CYS226 3.9 40.8 1.0
CA A:CYS226 4.1 40.2 1.0
C A:ALA228 4.2 42.6 1.0
O A:HOH415 4.5 28.9 1.0
CA A:CYS303 4.5 45.7 1.0
O A:CYS226 4.5 40.7 1.0
C A:CYS226 4.5 40.4 1.0
CA A:CYS308 4.6 42.9 1.0
N A:ALA228 4.7 41.3 1.0
OE1 A:GLN312 4.7 85.4 1.0
CB A:ALA228 4.7 42.5 1.0
CA A:ALA228 4.8 41.8 1.0
ND2 A:ASN196 4.8 36.3 1.0
CB A:ASP305 4.9 51.9 1.0
O A:ALA228 4.9 43.5 1.0
O A:ASN300 4.9 42.3 1.0

Zinc binding site 2 out of 2 in 3guc

Go back to Zinc Binding Sites List in 3guc
Zinc binding site 2 out of 2 in the Human Ubiquitin-Activating Enzyme 5 in Complex with Amppnp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Human Ubiquitin-Activating Enzyme 5 in Complex with Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:27.1
occ:1.00
SG B:CYS308 2.3 37.8 1.0
SG B:CYS303 2.3 41.0 1.0
SG B:CYS229 2.4 45.4 1.0
SG B:CYS226 2.4 42.5 1.0
CB B:CYS308 3.1 41.0 1.0
CB B:CYS303 3.1 41.7 1.0
CB B:CYS226 3.4 40.7 1.0
N B:CYS229 3.5 41.9 1.0
CB B:CYS229 3.5 41.6 1.0
CA B:CYS229 3.6 44.0 1.0
N B:CYS226 4.0 39.8 1.0
CA B:CYS226 4.2 38.1 1.0
C B:ALA228 4.2 42.6 1.0
O B:HOH420 4.5 24.7 1.0
CA B:CYS308 4.6 43.4 1.0
C B:CYS226 4.6 39.8 1.0
CA B:CYS303 4.6 45.6 1.0
CB B:ALA228 4.6 40.7 1.0
O B:CYS226 4.6 39.4 1.0
N B:ALA228 4.7 41.4 1.0
ND2 B:ASN196 4.7 39.0 1.0
CA B:ALA228 4.7 42.2 1.0
OE1 B:GLN312 4.8 53.0 1.0
CB B:ASP305 4.8 48.0 1.0
O B:ALA228 4.9 45.1 1.0
O B:ASN300 5.0 45.0 1.0

Reference:

J.R.Walker, J.P.Bacik, Y.Li, J.Weigelt, C.Bountra, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon. Human Ubiquitin-Activating Enzyme 5 in Complex with Amppnp To Be Published.
Page generated: Wed Dec 16 04:22:03 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy