Atomistry » Zinc » PDB 3gjn-3gtp » 3go9
Atomistry »
  Zinc »
    PDB 3gjn-3gtp »
      3go9 »

Zinc in PDB 3go9: Predicted Insulinase Family Protease From Yersinia Pestis

Protein crystallography data

The structure of Predicted Insulinase Family Protease From Yersinia Pestis, PDB code: 3go9 was solved by J.Osipiuk, N.Maltseva, O.Onopriyenko, S.Peterson, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.30 / 1.62
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.890, 80.230, 66.620, 90.00, 99.34, 90.00
R / Rfree (%) 16.6 / 20.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Predicted Insulinase Family Protease From Yersinia Pestis (pdb code 3go9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Predicted Insulinase Family Protease From Yersinia Pestis, PDB code: 3go9:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 3go9

Go back to Zinc Binding Sites List in 3go9
Zinc binding site 1 out of 6 in the Predicted Insulinase Family Protease From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Predicted Insulinase Family Protease From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:11.7
occ:1.00
OE1 A:GLU108 2.2 11.3 1.0
OD2 A:ASP106 2.3 10.3 1.0
O A:HOH3 2.4 9.6 1.0
OD2 A:ASP396 2.4 12.1 1.0
O A:HOH521 2.4 14.4 1.0
OD1 A:ASP394 2.5 12.1 1.0
OD1 A:ASP106 2.5 11.0 1.0
OD2 A:ASP394 2.5 12.6 1.0
CG A:ASP106 2.8 11.8 1.0
CG A:ASP394 2.8 13.8 1.0
CD A:GLU108 3.4 17.3 1.0
CG A:ASP396 3.4 9.8 1.0
CB A:ASP396 3.8 9.7 1.0
OE2 A:GLU108 4.2 16.1 1.0
N A:ASP396 4.3 8.3 1.0
CB A:ASP394 4.3 11.7 1.0
CB A:ASP106 4.3 9.8 1.0
CG A:GLU108 4.3 13.7 1.0
OE2 A:GLU58 4.4 10.5 1.0
OD1 A:ASP55 4.4 19.0 1.0
NH1 A:ARG109 4.5 15.2 1.0
OD1 A:ASP396 4.5 10.7 1.0
O A:GLU108 4.6 13.8 1.0
CA A:ASP396 4.7 8.8 1.0
OG1 A:THR395 4.8 8.3 1.0
O A:HOH633 4.9 22.1 1.0
O A:HOH1 4.9 12.8 1.0
N A:ASN107 4.9 11.7 1.0
N A:GLU108 5.0 13.8 1.0

Zinc binding site 2 out of 6 in 3go9

Go back to Zinc Binding Sites List in 3go9
Zinc binding site 2 out of 6 in the Predicted Insulinase Family Protease From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Predicted Insulinase Family Protease From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn602

b:17.5
occ:0.50
O A:HOH534 1.6 15.6 1.0
O A:HOH795 1.9 28.9 1.0
OD2 A:ASP165 1.9 20.5 1.0
NE2 A:HIS79 2.0 11.8 1.0
O A:ILE167 2.4 11.2 1.0
CG A:ASP165 2.7 16.9 1.0
CE1 A:HIS79 2.7 13.3 1.0
OD1 A:ASP165 3.0 15.6 1.0
CD2 A:HIS79 3.2 16.6 1.0
C A:ILE167 3.5 11.3 1.0
O A:HOH679 3.7 35.8 1.0
ND1 A:HIS79 3.9 11.9 1.0
CB A:ASP165 4.0 15.1 1.0
O A:HOH879 4.1 38.7 1.0
CB A:ILE167 4.2 10.5 1.0
CG A:HIS79 4.2 11.5 1.0
CA A:ILE167 4.3 10.4 1.0
N A:ILE167 4.5 10.5 1.0
N A:ALA168 4.5 9.3 1.0
O A:HOH677 4.7 28.5 1.0
NH2 A:ARG83 4.7 23.8 1.0
O A:HOH589 4.7 15.2 1.0
CA A:ALA168 4.7 9.5 1.0
O A:GLY194 4.8 18.0 1.0
CG2 A:ILE167 4.8 13.3 1.0
CA A:GLY194 4.9 17.5 1.0
CG2 A:THR169 4.9 12.5 1.0
C A:ALA168 4.9 10.5 1.0

Zinc binding site 3 out of 6 in 3go9

Go back to Zinc Binding Sites List in 3go9
Zinc binding site 3 out of 6 in the Predicted Insulinase Family Protease From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Predicted Insulinase Family Protease From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn603

b:19.3
occ:0.80
O A:HOH658 2.0 14.6 1.0
OE1 A:GLU358 2.0 17.1 1.0
NE2 A:HIS309 2.0 17.1 1.0
CD2 A:HIS309 3.0 16.3 1.0
CD A:GLU358 3.0 14.1 1.0
CE1 A:HIS309 3.1 17.4 1.0
OE2 A:GLU358 3.3 17.0 1.0
CG2 A:VAL313 3.6 14.8 1.0
CG A:HIS309 4.1 14.6 1.0
ND1 A:HIS309 4.1 16.4 1.0
CG A:GLU358 4.3 13.2 1.0
O A:HOH963 4.6 41.5 1.0
CB A:GLU358 4.7 11.4 1.0
CB A:VAL313 4.8 15.4 1.0
CA A:GLU358 4.8 10.8 1.0
O A:HOH979 4.9 41.8 1.0
CG1 A:VAL313 4.9 14.2 1.0

Zinc binding site 4 out of 6 in 3go9

Go back to Zinc Binding Sites List in 3go9
Zinc binding site 4 out of 6 in the Predicted Insulinase Family Protease From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Predicted Insulinase Family Protease From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn604

b:29.2
occ:0.60
OD2 A:ASP327 1.9 33.9 1.0
O A:HOH523 2.1 23.8 1.0
O A:HOH869 2.1 40.3 1.0
NE2 A:HIS340 2.1 19.1 1.0
OD1 A:ASP327 2.4 34.7 1.0
CG A:ASP327 2.5 25.0 1.0
CE1 A:HIS340 3.0 20.4 1.0
CD2 A:HIS340 3.2 19.3 1.0
NH2 A:ARG329 3.9 43.7 1.0
CB A:ASP327 4.0 24.3 1.0
ND1 A:HIS340 4.2 15.8 1.0
O A:HOH907 4.2 30.0 1.0
CG A:HIS340 4.3 17.1 1.0
CB A:ALA338 4.3 15.1 1.0
CZ A:ARG329 4.7 41.3 1.0
N A:ASP327 4.8 23.0 1.0
CA A:ASP327 4.9 22.6 1.0

Zinc binding site 5 out of 6 in 3go9

Go back to Zinc Binding Sites List in 3go9
Zinc binding site 5 out of 6 in the Predicted Insulinase Family Protease From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Predicted Insulinase Family Protease From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn605

b:32.2
occ:0.60
O A:HOH841 1.8 38.9 1.0
OE1 A:GLU416 2.1 30.0 1.0
OE2 A:GLU416 2.6 28.7 1.0
CD A:GLU416 2.7 24.0 1.0
CG A:GLU416 4.1 18.4 1.0
O A:HOH931 4.4 36.7 1.0
O A:HOH983 4.5 38.0 1.0
CB A:GLU416 4.9 14.8 1.0
O A:HOH855 4.9 35.8 1.0

Zinc binding site 6 out of 6 in 3go9

Go back to Zinc Binding Sites List in 3go9
Zinc binding site 6 out of 6 in the Predicted Insulinase Family Protease From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Predicted Insulinase Family Protease From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn606

b:22.6
occ:0.50
O A:HOH942 2.0 40.7 1.0
O A:HOH984 2.0 35.7 1.0
O A:HOH944 2.2 33.2 1.0
O A:HOH943 2.4 40.9 1.0
O A:HOH857 2.4 30.3 1.0
OD1 A:ASN157 4.2 24.6 1.0
ND2 A:ASN161 4.6 26.5 1.0
OD1 A:ASN161 4.7 28.2 1.0
O A:HOH980 4.9 33.9 1.0

Reference:

J.Osipiuk, N.Maltseva, O.Onopriyenko, S.Peterson, W.F.Anderson, A.Joachimiak. X-Ray Crystal Structure of Predicted Insulinase Family Protease From Yersinia Pestis. To Be Published.
Page generated: Wed Dec 16 04:21:16 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy