Zinc in PDB 3go9: Predicted Insulinase Family Protease From Yersinia Pestis

The structure of Predicted Insulinase Family Protease From Yersinia Pestis, PDB code: 3go9 was solved by J.Osipiuk, N.Maltseva, O.Onopriyenko, S.Peterson, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.30 / 1.62
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	42.890, 80.230, 66.620, 90.00, 99.34, 90.00
R / Rfree (%)	16.6 / 20.3

The binding sites of Zinc atom in the Predicted Insulinase Family Protease From Yersinia Pestis (pdb code 3go9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Predicted Insulinase Family Protease From Yersinia Pestis, PDB code: 3go9:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Predicted Insulinase Family Protease From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Predicted Insulinase Family Protease From Yersinia Pestis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:11.7 occ:1.00 OE1 A:GLU108 2.2 11.3 1.0 OD2 A:ASP106 2.3 10.3 1.0 O A:HOH3 2.4 9.6 1.0 OD2 A:ASP396 2.4 12.1 1.0 O A:HOH521 2.4 14.4 1.0 OD1 A:ASP394 2.5 12.1 1.0 OD1 A:ASP106 2.5 11.0 1.0 OD2 A:ASP394 2.5 12.6 1.0 CG A:ASP106 2.8 11.8 1.0 CG A:ASP394 2.8 13.8 1.0 CD A:GLU108 3.4 17.3 1.0 CG A:ASP396 3.4 9.8 1.0 CB A:ASP396 3.8 9.7 1.0 OE2 A:GLU108 4.2 16.1 1.0 N A:ASP396 4.3 8.3 1.0 CB A:ASP394 4.3 11.7 1.0 CB A:ASP106 4.3 9.8 1.0 CG A:GLU108 4.3 13.7 1.0 OE2 A:GLU58 4.4 10.5 1.0 OD1 A:ASP55 4.4 19.0 1.0 NH1 A:ARG109 4.5 15.2 1.0 OD1 A:ASP396 4.5 10.7 1.0 O A:GLU108 4.6 13.8 1.0 CA A:ASP396 4.7 8.8 1.0 OG1 A:THR395 4.8 8.3 1.0 O A:HOH633 4.9 22.1 1.0 O A:HOH1 4.9 12.8 1.0 N A:ASN107 4.9 11.7 1.0 N A:GLU108 5.0 13.8 1.0

Zinc binding site 2 out of 6 in the Predicted Insulinase Family Protease From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Predicted Insulinase Family Protease From Yersinia Pestis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn602 b:17.5 occ:0.50 O A:HOH534 1.6 15.6 1.0 O A:HOH795 1.9 28.9 1.0 OD2 A:ASP165 1.9 20.5 1.0 NE2 A:HIS79 2.0 11.8 1.0 O A:ILE167 2.4 11.2 1.0 CG A:ASP165 2.7 16.9 1.0 CE1 A:HIS79 2.7 13.3 1.0 OD1 A:ASP165 3.0 15.6 1.0 CD2 A:HIS79 3.2 16.6 1.0 C A:ILE167 3.5 11.3 1.0 O A:HOH679 3.7 35.8 1.0 ND1 A:HIS79 3.9 11.9 1.0 CB A:ASP165 4.0 15.1 1.0 O A:HOH879 4.1 38.7 1.0 CB A:ILE167 4.2 10.5 1.0 CG A:HIS79 4.2 11.5 1.0 CA A:ILE167 4.3 10.4 1.0 N A:ILE167 4.5 10.5 1.0 N A:ALA168 4.5 9.3 1.0 O A:HOH677 4.7 28.5 1.0 NH2 A:ARG83 4.7 23.8 1.0 O A:HOH589 4.7 15.2 1.0 CA A:ALA168 4.7 9.5 1.0 O A:GLY194 4.8 18.0 1.0 CG2 A:ILE167 4.8 13.3 1.0 CA A:GLY194 4.9 17.5 1.0 CG2 A:THR169 4.9 12.5 1.0 C A:ALA168 4.9 10.5 1.0

Zinc binding site 3 out of 6 in the Predicted Insulinase Family Protease From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Predicted Insulinase Family Protease From Yersinia Pestis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn603 b:19.3 occ:0.80 O A:HOH658 2.0 14.6 1.0 OE1 A:GLU358 2.0 17.1 1.0 NE2 A:HIS309 2.0 17.1 1.0 CD2 A:HIS309 3.0 16.3 1.0 CD A:GLU358 3.0 14.1 1.0 CE1 A:HIS309 3.1 17.4 1.0 OE2 A:GLU358 3.3 17.0 1.0 CG2 A:VAL313 3.6 14.8 1.0 CG A:HIS309 4.1 14.6 1.0 ND1 A:HIS309 4.1 16.4 1.0 CG A:GLU358 4.3 13.2 1.0 O A:HOH963 4.6 41.5 1.0 CB A:GLU358 4.7 11.4 1.0 CB A:VAL313 4.8 15.4 1.0 CA A:GLU358 4.8 10.8 1.0 O A:HOH979 4.9 41.8 1.0 CG1 A:VAL313 4.9 14.2 1.0

Zinc binding site 4 out of 6 in the Predicted Insulinase Family Protease From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Predicted Insulinase Family Protease From Yersinia Pestis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn604 b:29.2 occ:0.60 OD2 A:ASP327 1.9 33.9 1.0 O A:HOH523 2.1 23.8 1.0 O A:HOH869 2.1 40.3 1.0 NE2 A:HIS340 2.1 19.1 1.0 OD1 A:ASP327 2.4 34.7 1.0 CG A:ASP327 2.5 25.0 1.0 CE1 A:HIS340 3.0 20.4 1.0 CD2 A:HIS340 3.2 19.3 1.0 NH2 A:ARG329 3.9 43.7 1.0 CB A:ASP327 4.0 24.3 1.0 ND1 A:HIS340 4.2 15.8 1.0 O A:HOH907 4.2 30.0 1.0 CG A:HIS340 4.3 17.1 1.0 CB A:ALA338 4.3 15.1 1.0 CZ A:ARG329 4.7 41.3 1.0 N A:ASP327 4.8 23.0 1.0 CA A:ASP327 4.9 22.6 1.0

Zinc binding site 5 out of 6 in the Predicted Insulinase Family Protease From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Predicted Insulinase Family Protease From Yersinia Pestis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn605 b:32.2 occ:0.60 O A:HOH841 1.8 38.9 1.0 OE1 A:GLU416 2.1 30.0 1.0 OE2 A:GLU416 2.6 28.7 1.0 CD A:GLU416 2.7 24.0 1.0 CG A:GLU416 4.1 18.4 1.0 O A:HOH931 4.4 36.7 1.0 O A:HOH983 4.5 38.0 1.0 CB A:GLU416 4.9 14.8 1.0 O A:HOH855 4.9 35.8 1.0

Zinc binding site 6 out of 6 in the Predicted Insulinase Family Protease From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Predicted Insulinase Family Protease From Yersinia Pestis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn606 b:22.6 occ:0.50 O A:HOH942 2.0 40.7 1.0 O A:HOH984 2.0 35.7 1.0 O A:HOH944 2.2 33.2 1.0 O A:HOH943 2.4 40.9 1.0 O A:HOH857 2.4 30.3 1.0 OD1 A:ASN157 4.2 24.6 1.0 ND2 A:ASN161 4.6 26.5 1.0 OD1 A:ASN161 4.7 28.2 1.0 O A:HOH980 4.9 33.9 1.0

J.Osipiuk, N.Maltseva, O.Onopriyenko, S.Peterson, W.F.Anderson, A.Joachimiak. X-Ray Crystal Structure of Predicted Insulinase Family Protease From Yersinia Pestis. To Be Published.