Zinc in PDB 3gj8: Crystal Structure of Human Rangdp-NUP153ZNF34 Complex

The structure of Crystal Structure of Human Rangdp-NUP153ZNF34 Complex, PDB code: 3gj8 was solved by J.R.Partridge, T.U.Schwartz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.75 / 1.82
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	74.257, 61.713, 70.635, 90.00, 112.31, 90.00
R / Rfree (%)	17 / 20.3

The structure of Crystal Structure of Human Rangdp-NUP153ZNF34 Complex also contains other interesting chemical elements:

Magnesium

(Mg)

4 atoms

The binding sites of Zinc atom in the Crystal Structure of Human Rangdp-NUP153ZNF34 Complex (pdb code 3gj8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Human Rangdp-NUP153ZNF34 Complex, PDB code: 3gj8:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Human Rangdp-NUP153ZNF34 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Rangdp-NUP153ZNF34 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn300 b:30.1 occ:1.00 SG B:CYS855 2.3 25.2 1.0 SG B:CYS866 2.4 30.3 1.0 SG B:CYS869 2.4 31.2 1.0 SG B:CYS852 2.5 30.2 1.0 CB B:CYS866 3.1 36.3 1.0 CB B:CYS852 3.1 32.1 1.0 CB B:CYS855 3.3 22.5 1.0 CB B:CYS869 3.5 28.3 1.0 N B:CYS855 3.8 26.7 1.0 N B:CYS869 3.8 31.0 1.0 CA B:CYS855 4.1 24.2 1.0 CA B:CYS869 4.2 35.1 1.0 CA B:CYS866 4.6 36.1 1.0 CB B:ALA868 4.6 32.7 1.0 CA B:CYS852 4.6 32.0 1.0 CB B:VAL854 4.7 31.1 1.0 C B:CYS855 4.7 27.3 1.0 CB B:VAL857 4.7 28.0 1.0 CB B:SER871 4.7 44.3 1.0 OG B:SER871 4.7 51.0 1.0 N B:LEU856 4.8 25.0 1.0 C B:VAL854 4.8 27.7 1.0 C B:CYS869 4.9 36.3 1.0 N B:VAL857 4.9 25.7 1.0 C B:ALA868 4.9 37.0 1.0 N B:GLU870 5.0 34.3 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Human Rangdp-NUP153ZNF34 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Human Rangdp-NUP153ZNF34 Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn300 b:32.8 occ:1.00 SG D:CYS855 2.3 27.8 1.0 SG D:CYS866 2.4 34.0 1.0 SG D:CYS869 2.4 34.7 1.0 SG D:CYS852 2.4 34.9 1.0 CB D:CYS866 3.1 35.4 1.0 CB D:CYS852 3.1 34.6 1.0 CB D:CYS855 3.3 25.8 1.0 CB D:CYS869 3.4 31.6 1.0 N D:CYS855 3.8 28.1 1.0 N D:CYS869 3.8 36.4 1.0 CA D:CYS855 4.1 27.3 1.0 CA D:CYS869 4.2 37.8 1.0 CB D:ALA868 4.5 33.7 1.0 CA D:CYS866 4.6 37.3 1.0 CA D:CYS852 4.6 30.2 1.0 CB D:VAL854 4.6 36.1 1.0 C D:CYS855 4.7 28.5 1.0 CB D:SER871 4.7 53.4 1.0 C D:VAL854 4.8 28.6 1.0 CB D:VAL857 4.8 30.6 1.0 C D:CYS869 4.8 44.3 1.0 N D:LEU856 4.8 29.0 1.0 C D:ALA868 4.9 38.3 1.0 N D:GLU870 4.9 40.8 1.0 N D:VAL857 5.0 27.9 1.0 OG D:SER871 5.0 57.9 1.0 N D:SER871 5.0 51.8 1.0

J.R.Partridge, T.U.Schwartz. Crystallographic and Biochemical Analysis of the Ran-Binding Zinc Finger Domain. J.Mol.Biol. V. 391 375 2009.
ISSN: ISSN 0022-2836
PubMed: 19505478
DOI: 10.1016/J.JMB.2009.06.011