Zinc in PDB 3gj7: Crystal Structure of Human Rangdp-NUP153ZNF12 Complex

The structure of Crystal Structure of Human Rangdp-NUP153ZNF12 Complex, PDB code: 3gj7 was solved by J.R.Partridge, T.U.Schwartz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.75 / 1.93
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	58.523, 61.129, 80.215, 90.00, 93.71, 90.00
R / Rfree (%)	18.6 / 22.9

The structure of Crystal Structure of Human Rangdp-NUP153ZNF12 Complex also contains other interesting chemical elements:

Magnesium

(Mg)

6 atoms

The binding sites of Zinc atom in the Crystal Structure of Human Rangdp-NUP153ZNF12 Complex (pdb code 3gj7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Human Rangdp-NUP153ZNF12 Complex, PDB code: 3gj7:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Human Rangdp-NUP153ZNF12 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Rangdp-NUP153ZNF12 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn300 b:67.9 occ:1.00 SG B:CYS730 2.4 57.6 1.0 SG B:CYS744 2.4 70.5 1.0 SG B:CYS741 2.5 70.5 1.0 SG B:CYS727 2.5 67.7 1.0 CB B:CYS741 3.1 80.9 1.0 CB B:CYS727 3.2 65.5 1.0 CB B:CYS730 3.4 51.3 1.0 CB B:CYS744 3.5 80.9 1.0 N B:CYS730 3.7 59.2 1.0 N B:CYS744 3.9 79.8 1.0 CA B:CYS730 4.1 56.2 1.0 CA B:CYS744 4.3 82.4 1.0 CB B:THR729 4.5 61.2 1.0 CB B:ALA743 4.6 73.3 1.0 CB B:THR746 4.6 91.1 1.0 CA B:CYS741 4.6 87.2 1.0 CA B:CYS727 4.6 69.8 1.0 C B:CYS730 4.7 55.8 1.0 C B:THR729 4.7 57.0 1.0 N B:LEU731 4.8 57.7 1.0 CB B:VAL732 4.8 56.1 1.0 C B:CYS744 4.9 79.4 1.0 OG1 B:THR746 4.9 85.2 1.0 N B:VAL732 4.9 61.6 1.0 CA B:THR729 4.9 60.4 1.0 CG2 B:THR729 4.9 57.0 1.0 N B:THR729 4.9 64.0 1.0 C B:ALA743 5.0 77.0 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Human Rangdp-NUP153ZNF12 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Human Rangdp-NUP153ZNF12 Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn300 b:40.6 occ:1.00 SG D:CYS741 2.2 41.0 1.0 SG D:CYS730 2.3 34.9 1.0 SG D:CYS744 2.3 41.9 1.0 SG D:CYS727 2.4 41.2 1.0 CB D:CYS741 3.0 37.0 1.0 CB D:CYS727 3.1 32.4 1.0 CB D:CYS730 3.3 32.8 1.0 CB D:CYS744 3.5 46.5 1.0 N D:CYS730 3.8 37.1 1.0 N D:CYS744 3.8 44.2 1.0 CA D:CYS730 4.1 37.9 1.0 CA D:CYS744 4.2 42.6 1.0 CA D:CYS741 4.5 49.6 1.0 CA D:CYS727 4.5 40.9 1.0 CB D:ALA743 4.6 39.8 1.0 CB D:THR729 4.6 52.6 1.0 C D:CYS730 4.7 36.3 1.0 OG1 D:THR746 4.7 66.3 1.0 CB D:VAL732 4.7 41.6 1.0 CB D:THR746 4.7 58.6 1.0 N D:LEU731 4.8 37.6 1.0 C D:THR729 4.8 42.0 1.0 C D:CYS744 4.9 42.8 1.0 C D:ALA743 4.9 52.3 1.0 N D:VAL732 4.9 39.9 1.0 N D:GLU745 4.9 43.2 1.0 N D:ALA743 5.0 45.1 1.0

J.R.Partridge, T.U.Schwartz. Crystallographic and Biochemical Analysis of the Ran-Binding Zinc Finger Domain. J.Mol.Biol. V. 391 375 2009.
ISSN: ISSN 0022-2836
PubMed: 19505478
DOI: 10.1016/J.JMB.2009.06.011