Atomistry » Zinc » PDB 3g8u-3gkl » 3gj4
Atomistry »
  Zinc »
    PDB 3g8u-3gkl »
      3gj4 »

Zinc in PDB 3gj4: Crystal Structure of Human Rangdp-NUP153ZNF3 Complex

Protein crystallography data

The structure of Crystal Structure of Human Rangdp-NUP153ZNF3 Complex, PDB code: 3gj4 was solved by J.R.Partridge, T.U.Schwartz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.47 / 2.15
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 68.422, 61.567, 72.062, 90.00, 110.01, 90.00
R / Rfree (%) 20.5 / 25.7

Other elements in 3gj4:

The structure of Crystal Structure of Human Rangdp-NUP153ZNF3 Complex also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Rangdp-NUP153ZNF3 Complex (pdb code 3gj4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Human Rangdp-NUP153ZNF3 Complex, PDB code: 3gj4:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3gj4

Go back to Zinc Binding Sites List in 3gj4
Zinc binding site 1 out of 2 in the Crystal Structure of Human Rangdp-NUP153ZNF3 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Rangdp-NUP153ZNF3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn300

b:52.0
occ:1.00
SG B:CYS798 2.4 48.5 1.0
SG B:CYS812 2.5 51.7 1.0
SG B:CYS809 2.5 45.3 1.0
SG B:CYS795 2.6 51.7 1.0
CB B:CYS795 3.2 58.3 1.0
CB B:CYS809 3.2 46.6 1.0
CB B:CYS798 3.4 43.4 1.0
CB B:CYS812 3.4 54.8 1.0
N B:CYS798 3.7 55.5 1.0
N B:CYS812 3.9 57.5 1.0
CA B:CYS798 4.0 48.5 1.0
CA B:CYS812 4.2 56.8 1.0
CB B:SER814 4.6 66.8 1.0
C B:CYS798 4.6 46.7 1.0
CB B:VAL797 4.6 59.2 1.0
N B:CYS799 4.7 51.7 1.0
CA B:CYS795 4.7 60.0 1.0
CB B:VAL800 4.7 51.7 1.0
CA B:CYS809 4.7 53.4 1.0
C B:VAL797 4.8 56.4 1.0
CB B:SER811 4.8 51.9 1.0
N B:VAL800 4.8 62.3 1.0
C B:CYS812 4.9 60.4 1.0
N B:SER814 5.0 60.7 1.0

Zinc binding site 2 out of 2 in 3gj4

Go back to Zinc Binding Sites List in 3gj4
Zinc binding site 2 out of 2 in the Crystal Structure of Human Rangdp-NUP153ZNF3 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Human Rangdp-NUP153ZNF3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn300

b:41.2
occ:1.00
SG D:CYS809 2.3 42.1 1.0
SG D:CYS798 2.3 37.8 1.0
SG D:CYS812 2.4 44.1 1.0
SG D:CYS795 2.5 41.6 1.0
CB D:CYS809 3.1 38.1 1.0
CB D:CYS795 3.1 36.3 1.0
CB D:CYS798 3.3 38.9 1.0
CB D:CYS812 3.3 40.9 1.0
N D:CYS798 3.7 48.9 1.0
OG D:SER814 3.8 74.2 1.0
N D:CYS812 3.9 46.2 1.0
CA D:CYS798 4.0 40.1 1.0
CA D:CYS812 4.1 45.8 1.0
CA D:CYS809 4.5 42.8 1.0
CB D:VAL800 4.6 47.0 1.0
CA D:CYS795 4.6 40.2 1.0
C D:CYS798 4.7 40.2 1.0
C D:CYS812 4.7 46.0 1.0
CB D:VAL797 4.7 54.0 1.0
C D:VAL797 4.8 52.7 1.0
CB D:SER811 4.8 45.1 1.0
N D:VAL800 4.8 49.1 1.0
N D:CYS799 4.8 45.1 1.0
CB D:SER814 4.9 63.8 1.0
C D:SER811 5.0 51.9 1.0
ND2 D:ASN802 5.0 56.6 1.0

Reference:

J.R.Partridge, T.U.Schwartz. Crystallographic and Biochemical Analysis of the Ran-Binding Zinc Finger Domain. J.Mol.Biol. V. 391 375 2009.
ISSN: ISSN 0022-2836
PubMed: 19505478
DOI: 10.1016/J.JMB.2009.06.011
Page generated: Thu Oct 24 13:43:36 2024

Last articles

As in 3GSK
As in 3G3S
As in 3GH3
As in 3GK2
As in 3GK1
As in 3G2F
As in 3FPC
As in 3FRG
As in 3FPL
As in 3FKG
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy