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Zinc in PDB 3gj4: Crystal Structure of Human Rangdp-NUP153ZNF3 Complex

Protein crystallography data

The structure of Crystal Structure of Human Rangdp-NUP153ZNF3 Complex, PDB code: 3gj4 was solved by J.R.Partridge, T.U.Schwartz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.47 / 2.15
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 68.422, 61.567, 72.062, 90.00, 110.01, 90.00
R / Rfree (%) 20.5 / 25.7

Other elements in 3gj4:

The structure of Crystal Structure of Human Rangdp-NUP153ZNF3 Complex also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Rangdp-NUP153ZNF3 Complex (pdb code 3gj4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Human Rangdp-NUP153ZNF3 Complex, PDB code: 3gj4:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3gj4

Go back to Zinc Binding Sites List in 3gj4
Zinc binding site 1 out of 2 in the Crystal Structure of Human Rangdp-NUP153ZNF3 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Rangdp-NUP153ZNF3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn300

b:52.0
occ:1.00
SG B:CYS798 2.4 48.5 1.0
SG B:CYS812 2.5 51.7 1.0
SG B:CYS809 2.5 45.3 1.0
SG B:CYS795 2.6 51.7 1.0
CB B:CYS795 3.2 58.3 1.0
CB B:CYS809 3.2 46.6 1.0
CB B:CYS798 3.4 43.4 1.0
CB B:CYS812 3.4 54.8 1.0
N B:CYS798 3.7 55.5 1.0
N B:CYS812 3.9 57.5 1.0
CA B:CYS798 4.0 48.5 1.0
CA B:CYS812 4.2 56.8 1.0
CB B:SER814 4.6 66.8 1.0
C B:CYS798 4.6 46.7 1.0
CB B:VAL797 4.6 59.2 1.0
N B:CYS799 4.7 51.7 1.0
CA B:CYS795 4.7 60.0 1.0
CB B:VAL800 4.7 51.7 1.0
CA B:CYS809 4.7 53.4 1.0
C B:VAL797 4.8 56.4 1.0
CB B:SER811 4.8 51.9 1.0
N B:VAL800 4.8 62.3 1.0
C B:CYS812 4.9 60.4 1.0
N B:SER814 5.0 60.7 1.0

Zinc binding site 2 out of 2 in 3gj4

Go back to Zinc Binding Sites List in 3gj4
Zinc binding site 2 out of 2 in the Crystal Structure of Human Rangdp-NUP153ZNF3 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Human Rangdp-NUP153ZNF3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn300

b:41.2
occ:1.00
SG D:CYS809 2.3 42.1 1.0
SG D:CYS798 2.3 37.8 1.0
SG D:CYS812 2.4 44.1 1.0
SG D:CYS795 2.5 41.6 1.0
CB D:CYS809 3.1 38.1 1.0
CB D:CYS795 3.1 36.3 1.0
CB D:CYS798 3.3 38.9 1.0
CB D:CYS812 3.3 40.9 1.0
N D:CYS798 3.7 48.9 1.0
OG D:SER814 3.8 74.2 1.0
N D:CYS812 3.9 46.2 1.0
CA D:CYS798 4.0 40.1 1.0
CA D:CYS812 4.1 45.8 1.0
CA D:CYS809 4.5 42.8 1.0
CB D:VAL800 4.6 47.0 1.0
CA D:CYS795 4.6 40.2 1.0
C D:CYS798 4.7 40.2 1.0
C D:CYS812 4.7 46.0 1.0
CB D:VAL797 4.7 54.0 1.0
C D:VAL797 4.8 52.7 1.0
CB D:SER811 4.8 45.1 1.0
N D:VAL800 4.8 49.1 1.0
N D:CYS799 4.8 45.1 1.0
CB D:SER814 4.9 63.8 1.0
C D:SER811 5.0 51.9 1.0
ND2 D:ASN802 5.0 56.6 1.0

Reference:

J.R.Partridge, T.U.Schwartz. Crystallographic and Biochemical Analysis of the Ran-Binding Zinc Finger Domain. J.Mol.Biol. V. 391 375 2009.
ISSN: ISSN 0022-2836
PubMed: 19505478
DOI: 10.1016/J.JMB.2009.06.011
Page generated: Wed Dec 16 04:20:45 2020

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